Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00253 ATGCATCGGTGCAGCAGCCCTCACGGGAATCAAGTGGGTGGTCCGTGCTCCTGCGGTTTGTTTCACGCTCCAACCAATTCTTTCTCCATGTTATTCTCCACTTCCAATAACCACAAACAGTTCGATGAAGTTGATCATACATATCCATTCACCTCGTCTTCGTCTTCTGTGGATTGCACTCTCTCTTTAGGGACTCCCTCCACTCGTCAAACAGATGACAAATCGATTAGCCGTCACCGACGGCCCGGCTCGTGCATGTCTAACCTCTGTTGGGATATATTTCAGACCAAACAGCCTCCCTCATCAGCACCTACCCATAAAAGCAGTCGAGGAGGTAGCAGCGGCAATAACTTGAATGGAGACTCTCTTCTCGCTCGAAGATGTGCCAACTGTGATACAACATCTACACCTCTTTGGAGAAACGGACCCAGAGGCCCCAAGTCACTGTGCAATGCGTGTGGAATCCGTTACAAGAAAGAAGAGAGACGCGCCACCAGTACCACCGCCAGTGCCGCTGCAGCGACGGTCATAGAACCACAACATATGATGAGTCATCACTCATGGGCTCACTATGCACAGTCCCAGAAGGTACCTTCCATGAGTACTCCAGCTCTCGACAATGAATTCAGGTTCATCGAAGACGACGATCGGGAGTCCGACACCAGCATTCCTTTCCTTTCATGGCGTCTCAATGTCCCGGACAGGCCGAGTCTTGTTCATGACTACACATGA 732 0.5068 MHRCSSPHGNQVGGPCSCGLFHAPTNSFSMLFSTSNNHKQFDEVDHTYPFTSSSSSVDCTLSLGTPSTRQTDDKSISRHRRPGSCMSNLCWDIFQTKQPPSSAPTHKSSRGGSSGNNLNGDSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRATSTTASAAAATVIEPQHMMSHHSWAHYAQSQKVPSMSTPALDNEFRFIEDDDRESDTSIPFLSWRLNVPDRPSLVHDYT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00253 243 ProSitePatterns GATA-type zinc finger domain. 128 153 IPR000679 GO:0006355|GO:0043565
Eupl13g00253 243 MobiDBLite consensus disorder prediction 51 82 - -
Eupl13g00253 243 PANTHER GATA TRANSCRIPTION FACTOR 18 10 243 IPR044272 GO:0003700|GO:0009908
Eupl13g00253 243 MobiDBLite consensus disorder prediction 51 71 - -
Eupl13g00253 243 Pfam GATA zinc finger 128 162 IPR000679 GO:0006355|GO:0043565
Eupl13g00253 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 125 163 - -
Eupl13g00253 243 SMART GATA_3 122 174 IPR000679 GO:0006355|GO:0043565
Eupl13g00253 243 Gene3D - 124 195 IPR013088 GO:0006355|GO:0008270
Eupl13g00253 243 ProSiteProfiles GATA-type zinc finger domain profile. 122 158 IPR000679 GO:0006355|GO:0043565
Eupl13g00253 243 CDD ZnF_GATA 127 159 IPR000679 GO:0006355|GO:0043565
Eupl13g00253 243 MobiDBLite consensus disorder prediction 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00253 Eupl-Chr13 3576848 3578179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00253 17 243 C2C2-Gata Transcription Factor Family AT3G50870 44.211 2.04e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl13g00253 GATA 6.8e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00253 - - nnu:104601855 363.614