Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00250 ATGGCATCCAGCTCTCTCAGCTCGACTTGGACTGCCAAGCAAAACAAATTGTTCGAAAAGGCCCTGGCCAAATATGACAAGGACACCCCTGACCGCTGGCAGAATGTTGCCAAGGTAGTCGGTGGAAAAACTGCAGAGGAAGTGAAGAAGCATTATGAGCTCCTCGTAGAGGACGTCAAGCATATCGAGTCCGGCCAAGTGCCGTTCCCCAATTACAGGACTACTGGGGGAGGCAGAGGTAGTATACCAATATTTCCTTTACCTAGTAGCGTAAAGCGTAAAGTGGCGAACGGCAAAGGTAGTATACCAATTGCCGTTCCCTCTACGTTAGATGCTGAAGTACCTAAAGCACCAATGAAGTCGAATCTGCAGCAATAG 378 0.4894 MASSSLSSTWTAKQNKLFEKALAKYDKDTPDRWQNVAKVVGGKTAEEVKKHYELLVEDVKHIESGQVPFPNYRTTGGGRGSIPIFPLPSSVKRKVANGKGSIPIAVPSTLDAEVPKAPMKSNLQQ* 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00250 125 CDD SANT 9 56 IPR001005 -
Eupl13g00250 125 Gene3D - 2 69 - -
Eupl13g00250 125 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Eupl13g00250 125 SMART sant 6 58 IPR001005 -
Eupl13g00250 125 FunFam Transcription factor SRM1 2 69 - -
Eupl13g00250 125 SUPERFAMILY Homeodomain-like 8 64 IPR009057 -
Eupl13g00250 125 ProSiteProfiles SANT domain profile. 5 60 IPR017884 -
Eupl13g00250 125 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 79 IPR044636 GO:0003700
Eupl13g00250 125 Pfam Myb-like DNA-binding domain 8 52 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00250 Eupl-Chr13 3502508 3503501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl13g00250 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00250 - - csav:115700854 139.813