Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00249 ATGGCGTCTGCAGATGTTGAATACAGATGCTTCGTCGGCGGACTCGCATGGGCGACAGATGACCAGTCCTTGGAGAGGGCTTTCAGTGCGTTCGGCGATATCCTCGAATCAAAGATCATAAGTGACCGTGAAACTGGGAGATCGAGGGGGTTTGGGTTCGTGACTTTCGCTAACGAGCAGGCGATGAAGGACGCCATCGAAGGGATGAATGGACAGAACCTTGATGGACGTAGCATAACTGTTAACGAGGCCCAGAACAGATCAAGCGGTGGCGGTGGCGGTGGATTCCGTAGCGGTGGCGGGGGCGGTGGTTATGGGGGTGGTGGCGGAGGCAGTTACGGTGGTGGTGGTGGTGGATACGGTGGTGGTGGACGCCGTGATGGCGGCGGCGGTGGTGGTTACAGCCGCAGCGGTGGTGGTGGTGGTGGCCGTGAACGTGGATACGGCGGAGACAGTGGTGGTGGATCTCGCTACTCTAGGGATGACGGTGCTTCCGGTGGAAATTGGAGGAACTAG 516 0.5872 MASADVEYRCFVGGLAWATDDQSLERAFSAFGDILESKIISDRETGRSRGFGFVTFANEQAMKDAIEGMNGQNLDGRSITVNEAQNRSSGGGGGGFRSGGGGGGYGGGGGGSYGGGGGGYGGGGRRDGGGGGGYSRSGGGGGGRERGYGGDSGGGSRYSRDDGASGGNWRN* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00249 171 SMART rrm1_1 9 82 IPR000504 GO:0003723
Eupl13g00249 171 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Eupl13g00249 171 MobiDBLite consensus disorder prediction 73 92 - -
Eupl13g00249 171 MobiDBLite consensus disorder prediction 70 171 - -
Eupl13g00249 171 Gene3D - 2 123 IPR012677 -
Eupl13g00249 171 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Eupl13g00249 171 CDD RRM2_NsCP33_like 9 84 - -
Eupl13g00249 171 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Eupl13g00249 171 PANTHER GEO13361P1-RELATED 3 160 - -
Eupl13g00249 171 FunFam Glycine-rich RNA-binding protein GRP1A 2 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00249 Eupl-Chr13 3487598 3489680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00249 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 37.975 3.27e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00249 - K13195 msin:131228732 162.925