Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00232 ATGGCTGAACCAGAACTTCTTCTTCTCTTCCTTCCTGCAGCAATTTTAGCTCTAGTTATGGTGTGGAATTTCATCAAAAGGAAGGAAAAAACACTTAAACTTCCACCAGGAAACATGGGTTGGCCTTTTCTTGGCGAAACCATTGGTTATCTGAAGCCTTATTCAGCTACTTCTATTGGAGAATTCATGGAGCAACATATATCAAGGTTTGGGAAGATCTACAAGTCAAATTTGTTCGGTGCGCCCACGATAGTCTCAGCCGATCCCGAGCTAAACCGGTTTATATTACAAAACGAGGGACGATTGTTCGAATGCAGTTATCCAAGTAGTATAGGTGGAATTCTTGGGAAATGGTCGATGTTGGTTTTGGTAGGAGACATGCATAGGGACATGAGGATGATCTCTATGAACTTCATGAGCAATGCGATGCTTCGGACGCATCTGTTACGAGAAATTGAGAGGCATACCTTGTTGGTTCTAAGATCTTGGAAGGAGAATTTCACTCTTTTTGCCCAAGATGAAGCAAAGAAGTTTACCTTCAATTTGATGGCGAAACAACTCATGAGCATGGATCCCGGAAAGCCTGAAACCGAGCAGCTGAAGAGAGAGTACATTACGTTCATGAAAGGAGTCGTATCGCCACCTTTAAATTTGCCTGGAACCGCATATAGAAGGGCTTTAAAGTCGAGATCGAGCATACTTAAAGTTATCGAGCGGAAAATGGAAGAGAGAAACCAGAAGACGAACGAGGAACATGAGAAAAAAGAAGAAGATGATTTCCTTGGATGGGTTTTGAAGCATTCAAATCTTTCCACAGAACAGATTCTTGATTTGATACTAAGCTTGCTTTTCGCCGGTCATGAAACTTCCTCAGTAGCCATAGCTTTAGCTATCTACTTCTTGCAAGGTTGTCCCAAAGCAGTTCAACAGTTAACAGTCATCAGCGAGACACTCCGGCTTGGGAACGTTGTTAGGTTCGTGCACAGGAAGGCCATTAGAGACGTTAGGTACAAAGGGTTTGACATTCCATGTGGATGGAAAGTTCTTCCAGTGTTTGCTGCCGTACATTTGGATCCTTTGATCTACGACCAACCTCAACACTTCAATCCATGGAGATGGCAGAGTACTAATTCTCGAGGTTCTTCTTCATCTTCTTTTTCGAGCGCGGGGACGACCAACAACTTCATGCCATTTGGTGGTGGAACGCGACTATGCTCTGGGTCAGAACTGGCCAAGTTGGAGATGGCTGTGTTCATCCACCACCTGGTCCTGAATTACCGTTGGGAATTAGCTGAACCGGACGAAGCTCTCGCCTTCCCGTTCGTCGCCTTCCCCAAAGGCCTACCCATCAAGCTTTGCATCCTCTGCGATCCCCCAGAAAGCAAACCAGAGAGAGAGAGAGACGGAGAGATGTGGCGCTGCGTTTCTCGTGGATTTGGTTTTTCTTCTTCGTCTTCGAAGAGATTAATCTCAAGCGAACCTCTTAAACCTCTCATTGCGAGATTCCTCTCCACTGAATCACCTGGGGGACGATCTTCTTATACGATCGTTGATCACACTTATGATGCTGTCGTTGTGGGAGCAGGCGGCGCAGGACTCAGAGCGGCCATTGGACTCTCTGAGCATGGATTCAACACCGCTTGCATCACCAAGCTTTTCCCGACTCGTTCGCATACGGTTGCCGCACAGGGTGGTATAAATGCGGCATTAGGAAATATGACTGAAGATGACTGGAGGTGGCATATGTATGATACAGTCAAAGGAAGTGATTGGTTAGGTGATCAGGATGCTATTCAATATATGTGTAGAGAGGCACCAAAAGCAGTAATAGAGCTTGAGAATTATGGATTACCATTTTCTCGAACTGAAGATGGAAAAATATATCAACGTGCATTTGGTGGTCAAAGCCTGGACTTTGGAAAAGGTGGACAGGCCTACCGTTGTGCATGTGCTGCTGATCGAACTGGCCATGCTTTGCTGCACAGCTTGTATGGACAGGCAATGAAACACAATACACAATTTTTTGTGGAATACTTTGCATTGGATCTTATAATGGATAGTAGTGGTACCTGTCAAGGAGTTATTGCTCTAAATATGGAGGATGGGACACTCCATCGGTTTCATGCTTCTTCAACCATTTTGGCCACAGGGGGTTACGGTAGAGCGTACTTTTCTGCAACCTCAGCTCATACATGTACTGGAGATGGTAATGCCATGGTCGCACGTGCTGGTTTACCTCTTGAGGATCTTGAGTTTGTGCAGTTTCACCCCACGGGTATATATGGTGCAGGGTGCCTCATTACCGAAGGATCTCGTGGTGAAGGTGGTATTCTTAGGAACAGTGAAGGTGAACGATTTATGGAACGCTATGCACCTACTGCCAAGGATCTTGCATCAAGAGATGTTGTTTCGAGATCTATGACCATGGAAATCCGAGAAGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTCCACTTGAATCACTTACCCCCAGATGTACTGAAGGAGAGACTTCCCGGAATCTCTGAAACTGCTGCCATTTTTGCGGGTGTCGATGTTACCAAGGAGCCCATCCCTGTGTTACCTACTGTTCATTATAATATGGGAGGTATCCCCACAAATTACCATGGAGAGGTGGTTAGCATCAAAGGGGATGATCCAGATGCTGTAGTTCCTGGACTAATGGCTGCTGGGGAGGCAGCATGTGCATCAGTTCATGGTGCCAATCGGCTTGGTGCAAATTCTTTGCTTGACATTGTTGTTTTTGGTCGAGCTTGTGCAAATAGGGTTGCGGAGATTCATAAACCAGGAGAGAAACAAAAGCCTTTGGAAAGTGATGCTGGGGAGAAGACTATTGCATGGCTGGATAAACTAAGGAACTCGAATGGTTCATTGCCAACTTCAAAGATCCGTCTGAATATGCAACGGGTGATGCAAACTAATGCTGCTGTGTTCCGCACTCAGGAAACATTAGAAGAAGGTTGTCAGTTAATTGATAAAGCATGGGAGAGCTTTCATGATGTTAAGTTGCAGGATCGGAGTCTTATATGGAACTCTGACTTGATAGAAACAATTGAACTTGAAAACCTTTTGATAAATGCCTGTATAACCATGCACTCTGCTGAGGCTAGGAAGGAGAGCAGAGGAGCCCATGCCCGTGAAGATTTTACTAAAAGGGATGATGTGAATTGGATGAAGCACACTTTGGGGTATTGGGAGAATGAGAAGGTCCGGCTAGATTACAGGCCAGTCCATATGAACACATTGGACGATGAAGTTGAATCATTCCCTCCAAAGGCGCGTGTTTATTGA 3318 0.4539 MAEPELLLLFLPAAILALVMVWNFIKRKEKTLKLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRFGKIYKSNLFGAPTIVSADPELNRFILQNEGRLFECSYPSSIGGILGKWSMLVLVGDMHRDMRMISMNFMSNAMLRTHLLREIERHTLLVLRSWKENFTLFAQDEAKKFTFNLMAKQLMSMDPGKPETEQLKREYITFMKGVVSPPLNLPGTAYRRALKSRSSILKVIERKMEERNQKTNEEHEKKEEDDFLGWVLKHSNLSTEQILDLILSLLFAGHETSSVAIALAIYFLQGCPKAVQQLTVISETLRLGNVVRFVHRKAIRDVRYKGFDIPCGWKVLPVFAAVHLDPLIYDQPQHFNPWRWQSTNSRGSSSSSFSSAGTTNNFMPFGGGTRLCSGSELAKLEMAVFIHHLVLNYRWELAEPDEALAFPFVAFPKGLPIKLCILCDPPESKPERERDGEMWRCVSRGFGFSSSSSKRLISSEPLKPLIARFLSTESPGGRSSYTIVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHSLYGQAMKHNTQFFVEYFALDLIMDSSGTCQGVIALNMEDGTLHRFHASSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVVSIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIHKPGEKQKPLESDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQTNAAVFRTQETLEEGCQLIDKAWESFHDVKLQDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDVNWMKHTLGYWENEKVRLDYRPVHMNTLDDEVESFPPKARVY* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00232 1105 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 522 1105 IPR014006 GO:0016627|GO:0022900|GO:0050660
Eupl13g00232 1105 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 760 863 IPR027477 -
Eupl13g00232 1105 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 511 734 - -
Eupl13g00232 1105 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 864 929 - -
Eupl13g00232 1105 Gene3D - 945 1055 - -
Eupl13g00232 1105 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 750 868 IPR027477 -
Eupl13g00232 1105 Gene3D Cytochrome P450 25 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 944 1060 - -
Eupl13g00232 1105 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 556 565 IPR003952 GO:0016491
Eupl13g00232 1105 Gene3D - 522 929 IPR036188 -
Eupl13g00232 1105 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 964 1105 IPR037099 GO:0016491
Eupl13g00232 1105 CDD CYP90-like 66 452 - -
Eupl13g00232 1105 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 760 863 - -
Eupl13g00232 1105 Pfam Fumarate reductase flavoprotein C-term 974 1105 IPR015939 GO:0016491
Eupl13g00232 1105 NCBIfam succinate dehydrogenase flavoprotein subunit 519 1105 IPR011281 GO:0006099|GO:0016627|GO:0050660
Eupl13g00232 1105 Coils Coil 237 258 - -
Eupl13g00232 1105 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS P450 superfamily signature 405 416 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS P450 superfamily signature 396 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS P450 superfamily signature 312 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 SUPERFAMILY Cytochrome P450 30 452 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 501 1105 IPR030664 -
Eupl13g00232 1105 Gene3D succinate dehydrogenase protein domain 1056 1105 - -
Eupl13g00232 1105 SUPERFAMILY FAD/NAD(P)-binding domain 514 941 IPR036188 -
Eupl13g00232 1105 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 1057 1105 - -
Eupl13g00232 1105 Pfam FAD binding domain 522 918 IPR003953 -
Eupl13g00232 1105 Pfam Cytochrome P450 313 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 Pfam Cytochrome P450 35 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS E-class P450 group I signature 351 375 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS E-class P450 group I signature 274 291 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS E-class P450 group I signature 405 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Eupl13g00232 1105 PRINTS E-class P450 group I signature 395 405 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00232 Eupl-Chr13 3131649 3151647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00232 26 379 Cytochrome P450 AT3G50660 66.093 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00232 K00234 - nnu:104595705 1202.58