Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00228 ATGGTGGTGAAGAAGAACAGCGATAGCGACGAAGACGAGACTCTCTACTACCGCTACTCTGCCCCTCTATCATCCTCGTCAGCCCAAGATTCATCCAAAACATCAAAGAGATCAAGCGGCAGCGGAGGCCTCGCCCCATCGAAATCAACGGTGTATGTTGGCAATCTGGACTACAACCTCACAAACTCCGACCTCTTCACCATATTCTCCACCTTCGGCAAGGTCGCCAAGGTCACCGTCCTTAAAGATCGCCAATCACGCTGCAGCCGTGGCGTCGCCTTTGTTCTCTTCGTCTCTCAAGACGATGCGCGCAAAGCCGTACAAGAGATGCAGGGCAAGGTTTTGAACAAACGGACTCTAACGATCTCGATCGCTGCAGATAACGGCCGGGCCACTGAGTTCATACGGCGGAGGGTTTACAAGGACAAGAGCAGGTGCTATGAGTGTGGGGAGGATGGGCATCTATCTTATGAGTGTCCGAAGAATCAACTTGGGCCGAGGGAGAGGCCAGCTCCGAAGAAGGTCCGGAGGGCCCAAGGTGGAAATGGATCGGGGCGATGGCATGGGGAGGATGATGAATCCGATGGTGGAGAAACGTTTGAGGATGATAATTGGGCGTCTGTGGTTGATACGAGAGGGGTCGATGAGAGGTTGTTGAAAGAGAGTGAACGGGTCATGGAGAAGACGATGAAGAAGGAGAAGAAATCTTGTTATTTTAGCGATGAGAGCGATGACGACGAGTAA 744 0.5242 MVVKKNSDSDEDETLYYRYSAPLSSSSAQDSSKTSKRSSGSGGLAPSKSTVYVGNLDYNLTNSDLFTIFSTFGKVAKVTVLKDRQSRCSRGVAFVLFVSQDDARKAVQEMQGKVLNKRTLTISIAADNGRATEFIRRRVYKDKSRCYECGEDGHLSYECPKNQLGPRERPAPKKVRRAQGGNGSGRWHGEDDESDGGETFEDDNWASVVDTRGVDERLLKESERVMEKTMKKEKKSCYFSDESDDDE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00228 247 SUPERFAMILY RNA-binding domain, RBD 46 137 IPR035979 GO:0003676
Eupl13g00228 247 Gene3D - 4 124 IPR012677 -
Eupl13g00228 247 Pfam Zinc knuckle 145 161 IPR001878 GO:0003676|GO:0008270
Eupl13g00228 247 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 136 171 - -
Eupl13g00228 247 SMART rrm1_1 50 123 IPR000504 GO:0003723
Eupl13g00228 247 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 246 IPR044598 GO:0000398|GO:0005689
Eupl13g00228 247 MobiDBLite consensus disorder prediction 22 45 - -
Eupl13g00228 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Eupl13g00228 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Eupl13g00228 247 SUPERFAMILY Retrovirus zinc finger-like domains 130 162 IPR036875 GO:0003676|GO:0008270
Eupl13g00228 247 Gene3D - 136 171 - -
Eupl13g00228 247 MobiDBLite consensus disorder prediction 161 213 - -
Eupl13g00228 247 SMART c2hcfinal6 145 161 IPR001878 GO:0003676|GO:0008270
Eupl13g00228 247 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 2 133 - -
Eupl13g00228 247 ProSiteProfiles Zinc finger CCHC-type profile. 145 161 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00228 Eupl-Chr13 3084267 3086064 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00228 35 138 Eukaryotic Initiation Factors Gene Family AT4G34110 26.923 2.16e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00228 K13154 - nnu:104587370 377.867