Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00225 ATGGACGCCGAGGCCGAGACAAAGAACGATGGAGCTGCAGATTCTCCAACTTCCGTTCTCGAAGACGAGGATATATGCAAGGAGGAAATCGGAGCTGGATCAGAGGTCAATGTACTTCTATCGCTCGATGCAAAAAATGGAGATTCTTCTCTTATATCAAGAGCCATGGTGGAAGAGGAAGAGAAATTACAGGAAATTTGTGTGAAGGAGGAGGAGGCTGAAAGAGAAAAAAGTAACAAGGATGCACCCATCATGAATGACACCCATTTCACTAAACTAGACGAGCTTCTCACGCAGACCCAGATGTACTCCGAGTTCCTGCTGGAGAAAATGGAGGACATCGCATTTAATGGAGTGGAGAATGAAAGTGAGGAAACCGTCAAAGAGAAGAAACGGGGTCGTGGTGCAAAGAGGAAGTCCACCGCTCAATATAACAATAGGAAAGCCAAGAAAGCAGTTGCGGCAATGTTATCAAGATCCCAAGAAGGCACATCTCCTGAAGATGCCAACCTCACCGAGGAGGAGAGAGCTGAGAAAGAGCAGGCTGAACTTGTTCCATTATTGACTGGTGGAAAGTTGAAGCCTTATCAAATCAAAGGGGTGAAGTGGTTGATTTCGTTATGGCAAAATGGACTTAACGGGATTCTAGCAGATCAAATGGGGCTTGGCAAGACAATTCAAACTCTCAGCTTTCTTGCCCATTTAAAGGGCAAGGGCTTGGATGGGCCCTACTTAGTAATAGCTCCTCTTTCTACTCTATCAAACTGGATAAATGAGATCTCAAGGTTTGTTCCTTCAATGAATGCGATTATTTACCATGGAAATATGAAAGAAAGGTTGGAGATAAGAAAAAAGTACACGCCTAGAGCAATTGGCCCCAAATTCCCCATCATAATTACTTCTTATGGAGTTGCAATGAGCGACGCAAGATGTTTGAGGCATTACAATTGGAAATATGTTGTGGTAGACGAGGGACACCGGCTGAAAAATTCGAAATGCAAATTAGTGAAAGAATTGAAGCACTTGTCCATGGAAAATAAGCTTCTACTAACTGGAACGCCTCTGCAGAACAACTTGGCTGAGCTTTGGTCATTGTTGAACTTCATTTTGCCTGATATTTTCTCATCCCATAAAGAATTTGAGTCATGGTTTGATTTGTCAGGGAAGTGCAACGGTGAAGCCCAGCAGGAAGAGTTGGAGGAGAAAAGAAGAGTTCAAGTGGTGACAAAACTTCATGCAATATTACGCCCATTTCTCCTGCGAAGATTGAAGGCGGAAGTTGAGCAGATGCTACCTCGAAAAAAAGAGATCATTATATATGCCAATATGACGGAGCACCAAAAGAACATCCAGGATCATTTAGTTAATAAAACACTTGAGAACTATTTACAGGAGAAGGGAGACAGCAGTGGTAAAAGTGCAGGATATGGCATGAAAGGCAAGCTGAACAATTTGATGATTCAACTACGGAAGAACTGCAACCATCCTGACCTCTTGGAGTCCGAGTTTAATGGGTCGCTCTCTTATCCGCCCATCGAACAGTTGGTGGAACAGTGCGGCAAATTTCGCTTGCTGGACAGACTCTTGGCACAACTATTCGCTCGGAAGCACAAAGTTCTAATATTCTCACAGTGGACAAAGGTTTTGGATATAATTGATTACTATTTTAGTGAGAAAAGGCTTGAAGTTTGTAGGATTGATGGCAGCGTGAAACTGGATGAAAGACAGAGACAAGTATGTGTTATCTAA 1749 0.43 MDAEAETKNDGAADSPTSVLEDEDICKEEIGAGSEVNVLLSLDAKNGDSSLISRAMVEEEEKLQEICVKEEEAEREKSNKDAPIMNDTHFTKLDELLTQTQMYSEFLLEKMEDIAFNGVENESEETVKEKKRGRGAKRKSTAQYNNRKAKKAVAAMLSRSQEGTSPEDANLTEEERAEKEQAELVPLLTGGKLKPYQIKGVKWLISLWQNGLNGILADQMGLGKTIQTLSFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPSMNAIIYHGNMKERLEIRKKYTPRAIGPKFPIIITSYGVAMSDARCLRHYNWKYVVVDEGHRLKNSKCKLVKELKHLSMENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHKEFESWFDLSGKCNGEAQQEELEEKRRVQVVTKLHAILRPFLLRRLKAEVEQMLPRKKEIIIYANMTEHQKNIQDHLVNKTLENYLQEKGDSSGKSAGYGMKGKLNNLMIQLRKNCNHPDLLESEFNGSLSYPPIEQLVEQCGKFRLLDRLLAQLFARKHKVLIFSQWTKVLDIIDYYFSEKRLEVCRIDGSVKLDERQRQVCVI* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00225 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 578 IPR027417 -
Eupl13g00225 582 Pfam SNF2-related domain 196 498 IPR000330 GO:0005524|GO:0140658
Eupl13g00225 582 SMART ultradead3 189 383 IPR014001 -
Eupl13g00225 582 MobiDBLite consensus disorder prediction 1 22 - -
Eupl13g00225 582 Coils Coil 56 76 - -
Eupl13g00225 582 PANTHER SNF2/RAD54 HELICASE FAMILY 59 579 - -
Eupl13g00225 582 CDD SF2_C_SNF 510 579 - -
Eupl13g00225 582 Gene3D - 432 579 IPR027417 -
Eupl13g00225 582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 205 372 IPR014001 -
Eupl13g00225 582 FunFam ATP-dependent DNA helicase DDM1 187 431 - -
Eupl13g00225 582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 422 IPR027417 -
Eupl13g00225 582 MobiDBLite consensus disorder prediction 121 178 - -
Eupl13g00225 582 Gene3D - 188 431 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00225 Eupl-Chr13 3002488 3011376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00225 209 501 RAD5 or RAD16-like Gene Family AT5G43530 26.163 5.14e-22 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl13g00225 SNF2_N 1.6e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00225 K19001 - nnu:104601884 946.036