Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00219 ATGGGAGATTACAATGATGCTTTCATGCGCAATCGAGACGCGGCAGTGCAGGCTCGAACCAAAGCGCAGAATCGGGCGACCGTTCTTCAGTTGAAACTGATTGGGCAGAGTCATCCAACTGGTCTTACATCCAATCTTTTGAAGTTATTCGAGCCTCGACCTCCATTGGAATATAAACCACCTCCTGAGAAGAGGAAATGCCCATCCTATACGGGAATGGCACAATTCGTGAGCAACTTCGCTGAGCCAGGAGACCCTGAATATGCTCCTCCTGTCCAAAAGGGTGAAACTCCGACAGAAAGAAGGGCTAGAGTTCACAAGCTACGACTGGAAAATGGTGCTAAAAGGGCTGCTGAGGAGCTTGAGAAATATGATCCATCCAATGATCCTAATATATCAGGAGATCCATACAAGACATTGTTTATCGCAAGGCTTAATTATGAGTCAACCGAGCACAGAATCAAAAGGGAGTTTGAAGCTTATGGGCCAATCAAGCGGGTTCGTATGATTACGGATAAAGAGACGAATAAGCCTAGAGGATATGCCTTCATCGAGTACATGCATACACGGGATATGAAAGCTGCATACAAACAAGCTGATGGAAGGAAGCTGGATAACAGAAGGGTGCTTGTGGATGTTGAACGTGGTAGAACTGTTCCAAATTGGCGACCTCGCAGACTGGGCGGTGGACTTGGATCAACCAGGGTTGGAGGTGAAGAGGTTAATCAGAAGTATTCCGGCAGAGAGCCGCAGCAGATAGTTTCTGGAGGACCACCTCGATCAGAGGAACCAAGGGCCCGAGAGGATCGTCATGTAGACCGGGAGAGGGAGAAGTCCCATGAAAGGGGAAGAGATAGAGACCAGGAACGTGAGAAGTCCCGTGAACGCTCCCGTGACAGAACGCGTGATCGTGATCCGAAAGAGGAGAGACACCACAGAGAACGTGACAGGAATAGAGACAGGGACAAGGAGAGGGAGCGGGGGCGTGACCATGATCGAACACGTGGTCGGGATCGGGATCGGGATCGAGACCGTGGTCGTGATTACGACCGGAACCGAGACCGTGATCGTGATCGAGGTCGTGATCGCCCTCGAGAGAGGGACAGGGATTATGAGCGGGGGGAACCTGACCATGACAGTGGGCGTTCCCACGACAGGGAGCCTGATTATGACCGTGGTGAGTCAAAGCATGAACGGGACCGGCATGGTGAAAGGGACAGGGATCATGATCATGTGGAGCCTGAGCATGACCGTGAATGGTATGAGAATGTCCAGCCTGGCCATGGGTACGAGCGCTCAGAGCCTGACCAAGACCATGGACAATATGACCAATATGAGCACCAAGGTCAGGGACAGTATGACCATCTTGAGCCTCAGAGTGATCGTGAGCCAGAGGTTGATCGTGACCGCTACGATCAGTTGGAGCCTGAGGATTATCGATATGACCATGCAACTTCCGAGTCACGTGAAAGGGAGAGAACTCGGGACCGTGAACGGGATTACCAGCGCTCTGAGAGGTCTCTTTCTCGTGAATAA 1536 0.5143 MGDYNDAFMRNRDAAVQARTKAQNRATVLQLKLIGQSHPTGLTSNLLKLFEPRPPLEYKPPPEKRKCPSYTGMAQFVSNFAEPGDPEYAPPVQKGETPTERRARVHKLRLENGAKRAAEELEKYDPSNDPNISGDPYKTLFIARLNYESTEHRIKREFEAYGPIKRVRMITDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDNRRVLVDVERGRTVPNWRPRRLGGGLGSTRVGGEEVNQKYSGREPQQIVSGGPPRSEEPRAREDRHVDREREKSHERGRDRDQEREKSRERSRDRTRDRDPKEERHHRERDRNRDRDKERERGRDHDRTRGRDRDRDRDRGRDYDRNRDRDRDRGRDRPRERDRDYERGEPDHDSGRSHDREPDYDRGESKHERDRHGERDRDHDHVEPEHDREWYENVQPGHGYERSEPDQDHGQYDQYEHQGQGQYDHLEPQSDREPEVDRDRYDQLEPEDYRYDHATSESRERERTRDRERDYQRSERSLSRE* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00219 511 CDD RRM_snRNP70 137 227 IPR034143 GO:0030619
Eupl13g00219 511 MobiDBLite consensus disorder prediction 220 511 - -
Eupl13g00219 511 FunFam U1 small nuclear ribonucleoprotein 70 kDa 125 250 - -
Eupl13g00219 511 SMART rrm1_1 139 212 IPR000504 GO:0003723
Eupl13g00219 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 140 209 IPR000504 GO:0003723
Eupl13g00219 511 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 59 293 - -
Eupl13g00219 511 MobiDBLite consensus disorder prediction 456 511 - -
Eupl13g00219 511 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 41 129 IPR022023 -
Eupl13g00219 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 138 216 IPR000504 GO:0003723
Eupl13g00219 511 MobiDBLite consensus disorder prediction 261 443 - -
Eupl13g00219 511 Gene3D - 125 250 IPR012677 -
Eupl13g00219 511 MobiDBLite consensus disorder prediction 82 102 - -
Eupl13g00219 511 SUPERFAMILY RNA-binding domain, RBD 126 238 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00219 Eupl-Chr13 2958147 2969392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00219 140 213 C2H2 Transcription Factor Family AT2G19380 25.676 7.96e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00219 K11093 - csav:115714413 560.066