Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00217 ATGGCTTCATCCCCTGTGACTGCTCCGTCACCAGACACTCCATCTTCCCCAACTCCGCCATCCTCGTCGTCATCACCACCACCTCCACCAGCGGCATCATCTCCACCTCCGGCGACACCACCATCACCATCACCACCATCACCACCACCACCACCACCTACACCTGCATCCCCACCCCCACAGGTCTCATCCCCACCACCATCAAATAATTCTTCTTCCCCGTCGCCACCACCACCATCGAATAATTCTTCTTCCCCGCCACCACCACCACCACCAAATAATTCTTCTCCCTCACCACCCCCTTCGTCTTCAAACAACAGTACTACACCATCATCGCCATCCAATGGTGTTCCACCACCTCCACCACCCAGGTCAAGATCAACGCCACCACCTCCACATGCGCCTCCACCTCCACGTAGAACACCGCCATCATCACAGACTCCGTCACGTTCTAACAGCACGCCATCGAACGATAATTTCACTTCTCAGAAATTGCCCATTATAATTGGAGTCACGGCAGGGGTGGCGATACTGATCATTATTATGATTGTCATATTTGTGTGTTGCTCCAAGAAGAAGAAAAGAAGACAACATGATCCCATGCGATACTATAGGGACACGTCTGGTGGACCCAACGGCAATGAATATTACAACACCATGCAGAATTGGAACCACAGTTCCCAATCGATGGACCATGTCGTCAAGGCGCCCCCACCTCCAGGCTCAAACGGGTTAGGTGGTGGCGGATGGGCTCCACCGCCTCCACCTCCACTGATCATTAACAGTAGTGAAGTGAGCTCCAATTTCTCAGGCCCGCGTCAGCCAGTCCTACCGCCTCCGTCTCCAAACATCGCTCTAGGATTCAACAAGAGCACCTTCAGCTTTGATGAGTTAGCGGCAGCAACAGGCGGTTTCTCTCAGGCCAATTTATTGGGTCAAGGTGGGTTTGGGTACGTACACAAGGGGGTGTTGCCTAACGGTAAGGTGATAGCAGTGAAGAGCCTCAAATCAGGTAGTGGGCAAGGAGAGCGGGAGTTCCAGGCAGAAGTCGAGATCATTAGCCGTGTACATCACCGTCACCTTGTGTCGCTTGTCGGGTATTGTATCGCCGGCGGGCAACGGATGTTAGTTTACGAATTTGTTCCCAATAAGACTCTGGAATACCACCTACACGGAAATGGTCGTCCAACCATGGACTGGTCCAAGAGGCTCACGATTGCGTTGGGATCAGCAAAAGGGCTCGCATACCTTCATGAAGATTGCCATCCTCGCATTATCCACCGTGATATTAAAGCTGCTAATATTCTCATCGACGATAACTTTGAAGCCATGGTGGCAGATTTCGGATTGGCTAAGCTGTCTTCGGACAATTACACTCATGTATCGACACGTGTGATGGGTACATTCGGGTATTTGGCCCCTGAGTATGCATCAAGCGGCAAGCTAACAGAGAAGTCTGATGTTTTCTCATATGGTATCATGCTCTTGGAATTGATAACTGGACGACCACCGGTGGATACTACTAATGCATACGTGGAAGATAGCTTAGTGGACTGGGCTAGGCCTATTCTAAATAGTGCACTAGGGGACGGCAATTATGACAACTTGGTTGATCCACGCTTGGAGAACAATTACAACCCCAGTGAGATGGGACGCATGGTAGCATGTGCCGCTGCATGCATTCGTCATTCCGGAAGGAGGCGTCCCAAAATGAGCCAGATAGTCCGTGCGTTGGAGGGTGATGTCTCACTGGAGGACTTGAACGAGGGGGTGAGACCCGGTCAAAGCTCCGTGTTTGGGTCAACTGGAAGCTCAGAATATGATACAGGATCATACAATGCAGACATGAAGAAATTCAAGAAGATGGCATTGTCTAGCCAGGAATTCGCGAGCAGCGAATACAGTGGGCCGAGCAGTACTGAGGGTGCAAACTCTCGAGAAATTAACCGTAATGGGAACCAGAGGCTCAGCCCATGA 1977 0.5114 MASSPVTAPSPDTPSSPTPPSSSSSPPPPPAASSPPPATPPSPSPPSPPPPPPTPASPPPQVSSPPPSNNSSSPSPPPPSNNSSSPPPPPPPNNSSPSPPPSSSNNSTTPSSPSNGVPPPPPPRSRSTPPPPHAPPPPRRTPPSSQTPSRSNSTPSNDNFTSQKLPIIIGVTAGVAILIIIMIVIFVCCSKKKKRRQHDPMRYYRDTSGGPNGNEYYNTMQNWNHSSQSMDHVVKAPPPPGSNGLGGGGWAPPPPPPLIINSSEVSSNFSGPRQPVLPPPSPNIALGFNKSTFSFDELAAATGGFSQANLLGQGGFGYVHKGVLPNGKVIAVKSLKSGSGQGEREFQAEVEIISRVHHRHLVSLVGYCIAGGQRMLVYEFVPNKTLEYHLHGNGRPTMDWSKRLTIALGSAKGLAYLHEDCHPRIIHRDIKAANILIDDNFEAMVADFGLAKLSSDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSYGIMLLELITGRPPVDTTNAYVEDSLVDWARPILNSALGDGNYDNLVDPRLENNYNPSEMGRMVACAAACIRHSGRRRPKMSQIVRALEGDVSLEDLNEGVRPGQSSVFGSTGSSEYDTGSYNADMKKFKKMALSSQEFASSEYSGPSSTEGANSREINRNGNQRLSP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00217 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
Eupl13g00217 658 MobiDBLite consensus disorder prediction 1 161 - -
Eupl13g00217 658 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 174 626 IPR047117 -
Eupl13g00217 658 PRINTS Proline rich extensin signature 34 46 - -
Eupl13g00217 658 PRINTS Proline rich extensin signature 12 28 - -
Eupl13g00217 658 PRINTS Proline rich extensin signature 46 67 - -
Eupl13g00217 658 FunFam proline-rich receptor-like protein kinase PERK1 283 380 - -
Eupl13g00217 658 CDD STKc_IRAK 311 580 - -
Eupl13g00217 658 MobiDBLite consensus disorder prediction 588 607 - -
Eupl13g00217 658 MobiDBLite consensus disorder prediction 627 658 - -
Eupl13g00217 658 Gene3D Transferase(Phosphotransferase) domain 1 381 589 - -
Eupl13g00217 658 FunFam Proline-rich receptor-like protein kinase PERK1 381 589 - -
Eupl13g00217 658 MobiDBLite consensus disorder prediction 10 106 - -
Eupl13g00217 658 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Eupl13g00217 658 Gene3D Phosphorylase Kinase; domain 1 283 380 - -
Eupl13g00217 658 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g00217 658 MobiDBLite consensus disorder prediction 113 144 - -
Eupl13g00217 658 SMART serkin_6 305 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl13g00217 658 MobiDBLite consensus disorder prediction 145 161 - -
Eupl13g00217 658 Pfam Protein tyrosine and serine/threonine kinase 308 576 IPR001245 GO:0004672|GO:0006468
Eupl13g00217 658 SUPERFAMILY Protein kinase-like (PK-like) 284 578 IPR011009 -
Eupl13g00217 658 MobiDBLite consensus disorder prediction 237 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00217 Eupl-Chr13 2933000 2939629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00217 125 651 Trihelix Transcription Factor Family AT1G70460 48.188 4.53e-164 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Eupl13g00217 PK_Tyr_Ser-Thr 4.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00217 - - nnu:104595721 729.169