Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00212 ATGCCTCCGCGAGCAGCAAAGAGGGGGGCTTCGGCAAAGAAGCAATCGCCGAGGACAAAGAAAGCTACTACAGAACCCAAACCAGATGAGGTTCCATTGAGTGTTATCGAAGAAAACAAGATATCAGAATCAGAGGTTCTGTCGAGCCCCGTTGAGGATAAGAAGGTCCCGGAGGCGGCGACGCCGAGCACTGCCGCAGAAGATGAGGAAGTTAAACAAGGAGAGGAGGTTTCAATGACGAAGGCTTTGGAAGCTGAGGAGGTGTTTCCGAGTACCGATGAGGAGAAGATTGTTATAAAAGAAGAGGTTTCGGTGACTACGGTGGTGGTCGAGGAAACTAAGACAACGGTGGTGGTCGAGGAAACTAAGGTTGAAGAAATTGCCGAGGATAAGAGGATGGACCTTGCTACTTCGAATGCTGGTTCGGATGTTGAGATGGAGGGAAGCGGATCAGCTAAGGATTCGGAAGAAGTGAATGGCGAGGAGAATGAGAATGAAGGCAATCAGATGGATCTAGAACAAGCTGCCAAACAGGATTTATTTGAAGAAGAGACTCCAGCTGCTGATATTGAAGATCGTGTAGGAGGTGGGGACGGGGATGACACCACTGGTGCCAATGAGAGTGGTAATAGGGAAGCAGAGGGTGACAAGAGTGGAAGTGATGATGAAGAGGATGAAGACCCTTCTGCATACATGCAGGCTCCTCTTACAGACAGGAAAAAACAGAAGGAATTTGAAATTTTTGTTGGAGGATTGGATCGGGAGGCAGTTGAAGAAGATCTGATTAAAGTCTTCGGGGACTTTGGGGAAATTCAAGCTGTAAGGATAGTTAAACATCCAATCACACAAAAAAGTAAAGGTTTTGCATTTATTCGGTATGCTACTGTTGAGCAAGCGAAGAAGGTCCTGGACGAGTTGAAAGATGGAACAGAGGTGAGGGGCAAGCGTGTTGGTATATCGCCCAGTCAGGACAGTGATACACTTTACATGGGCAACATTTGCAAGACATGGAAAAAAGAGAATGTAACATCTAGTATTTGTGCTTTGCTGTTGGCCACCTTTTGTCATGCACTATATTGA 1080 0.4657 MPPRAAKRGASAKKQSPRTKKATTEPKPDEVPLSVIEENKISESEVLSSPVEDKKVPEAATPSTAAEDEEVKQGEEVSMTKALEAEEVFPSTDEEKIVIKEEVSVTTVVVEETKTTVVVEETKVEEIAEDKRMDLATSNAGSDVEMEGSGSAKDSEEVNGEENENEGNQMDLEQAAKQDLFEEETPAADIEDRVGGGDGDDTTGANESGNREAEGDKSGSDDEEDEDPSAYMQAPLTDRKKQKEFEIFVGGLDREAVEEDLIKVFGDFGEIQAVRIVKHPITQKSKGFAFIRYATVEQAKKVLDELKDGTEVRGKRVGISPSQDSDTLYMGNICKTWKKENVTSSICALLLATFCHALY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00212 359 Gene3D - 202 332 IPR012677 -
Eupl13g00212 359 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 317 IPR000504 GO:0003723
Eupl13g00212 359 MobiDBLite consensus disorder prediction 18 36 - -
Eupl13g00212 359 CDD RRM_SF 247 320 - -
Eupl13g00212 359 SMART rrm1_1 246 320 IPR000504 GO:0003723
Eupl13g00212 359 MobiDBLite consensus disorder prediction 68 89 - -
Eupl13g00212 359 SUPERFAMILY RNA-binding domain, RBD 246 341 IPR035979 GO:0003676
Eupl13g00212 359 MobiDBLite consensus disorder prediction 176 198 - -
Eupl13g00212 359 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 324 IPR000504 GO:0003723
Eupl13g00212 359 MobiDBLite consensus disorder prediction 1 89 - -
Eupl13g00212 359 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 54 342 - -
Eupl13g00212 359 MobiDBLite consensus disorder prediction 128 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00212 Eupl-Chr13 2875332 2880307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00212 247 306 Eukaryotic Initiation Factors Gene Family AT1G49760 31.667 3.05e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00212 - - nnu:104611254 282.722