Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00201 ATGACGATTCGAAACCTCCTCGGCCAACATTCGGTCGAGAGGAACCAAGATGCCACTGCATATGTTGGCAATCTCGACCCTCAGGTCTCTGAGGAGTTATTATGGGAGTTGTTTGTCCAAGCAGGTCCTGTTGTTACTGTTTACGTTCCAAAAGATAGTGTGACAAATCTCCGTCAAGGATATGGGTTTATGGAGTTCCTCAGTGAAGAAGATGCTGACTATGCAATTAAGGTTCTGAACATGATCAAACTTGATGGGAAGCCAATACGTGTAAATAAGGTTTCCCAAGACAAGAAGAGTTTGGATGTTGGAGCAAACCTTTTTGTTGGAAATCTTGATCCTATAATGAGAGGTCCTGAGACTGGGAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCTTTCGAGACATCTGATGCTGCTATTGAGGCCATGGGTGAGAGAGTCTTGGCTGCGAGCAATCCTGGTGCACAGAAAAACAGGCCTCACACCTTGTTTGCAAGTGGACCACCCACACTCGCAATGCTCCTCGGGCCAATGGTACCATGGGTTCGTCCATGCCTCCCCGGCCCTTTGCAAATGGCCCTGTTCCTCCTGGCCAAATTCCAGCGTTTCGCCCGCCACCCCCCACAAAGTGGGGCATTCCTACCTCCTATGCAGCTAGCAGGGCCACCATCTTGGCCGGGTCAGTCGCAGCAACTGGGCCAACCGAATGCACCACATATCAGGCCGCCTCTGCCCAATATGCCATCACCTCCACCTCCACCTCCACCTCCACAGGCAGCTGCAGTTCTTTCAAAGCCTCTGCCACCACCTGTTTGGCGGCCACCCCCACCCCCTCAGCAAATGGCTGGGAGGCCCTCCCTCCACCTCAGATGTCCATGCCACTGCCTCCACCACCCAATGCAATGCTGCCTTCGCCTCCAACATCTACTAGTTGAGAGATGA 948 0.5222 MTIRNLLGQHSVERNQDATAYVGNLDPQVSEELLWELFVQAGPVVTVYVPKDSVTNLRQGYGFMEFLSEEDADYAIKVLNMIKLDGKPIRVNKVSQDKKSLDVGANLFVGNLDPIMRGPETGNSRGFGFISYDSFETSDAAIEAMGERVLAASNPGAQKNRPHTLFASGPPTLAMLLGPMVPWVRPCLPGPLQMALFLLAKFQRFARHPPQSGAFLPPMQLAGPPSWPGQSQQLGQPNAPHIRPPLPNMPSPPPPPPPPQAAAVLSKPLPPPVWRPPPPPQQMAGRPSLHLRCPCHCLHHPMQCCLRLQHLLVER* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00201 315 SUPERFAMILY RNA-binding domain, RBD 18 150 IPR035979 GO:0003676
Eupl13g00201 315 Gene3D - 112 158 IPR012677 -
Eupl13g00201 315 Gene3D - 9 103 IPR012677 -
Eupl13g00201 315 MobiDBLite consensus disorder prediction 211 286 - -
Eupl13g00201 315 FunFam Splicing factor 3b subunit 4 9 102 - -
Eupl13g00201 315 SMART rrm1_1 19 92 IPR000504 GO:0003723
Eupl13g00201 315 SMART rrm1_1 106 158 IPR000504 GO:0003723
Eupl13g00201 315 CDD RRM1_SF3B4 21 93 IPR034158 -
Eupl13g00201 315 PANTHER SPLICING FACTOR 3B SUBUNIT 4 115 145 - -
Eupl13g00201 315 MobiDBLite consensus disorder prediction 240 284 - -
Eupl13g00201 315 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Eupl13g00201 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Eupl13g00201 315 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 149 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00201 Eupl-Chr13 2760699 2768766 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00201 21 150 Eukaryotic Initiation Factors Gene Family AT1G49760 33.775 2.91e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00201 K12831 - nnu:104601632 334.339