Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00197 ATGCCGGAGTACGGTGGAAGATACGAAGGTAATGGCGAGGAATACGACGATTACAGTCAACAGAAAGGTAGCAGTCATGGCGGTCCCGACGAATACAGCGATTCAAAATCTAGGCATGGTTCCCGTGATTATGAAAGAGAGTCTTCAAAAAGCAGAGAGAGAGGAAGAGAAAGAGGGAGGGAAAAGGAAAGGGATAGAAACAGGGACAGGGATAGGGATAGGGAACGAGACAGAGATCGCGATCGTCGTCACAGAGACCACTACAGGGATCGGAGCGATAGAAGGGAGAGGGGCCGAGATAGAGATGATGATGTTGATTATTACCATAGTCGAGACTATGAGAGGCGTAGAGATTATGATAGAGACAGAGATGGGCGCCATAGACATAGATCTCAATCTCGTTCAAAATCAAAAGGTAGATCTGATCATAGATCAAGGTCTCGTTCTCGGTCACGATCAAAAAGCAAACGGATTAGTGGTTTTGACATGGCGCCTCCTGCATCTGCAATGCTAGCTGGTGCTGCTATTGCAGGTCAAGTGCCTGGGACCACTCCTGCCATTCCTGGAATGTTTCCAAATATGTTCCCATTAGCGCCTGGACAGCCATTCGGAACCCTTCCTGTGATGCCAGTTCAGGCTATGACCCAGCAGGCTACACGACATGCTCGGCGGGTGTATGTTGGTGGCCTTTCCCCTACGGCTAATGAACAGTCAGTGGCGACCTTTTTCAGCCAGGTTATGTCCGCAATAGGAGGAAACACTGCAGGTCCAGGTGACGCTGTTGTCAATGTATACATAAACCACGAAAAGAAGTTTGCTTTTGTGGAGATGAGGTCTGTTGAGGAAGCCAGTAATGCAATGGCCTTGGATGGTATCATTTTTGAGGGAGCACCTGTGAAGGTCAGGAGGCCTAGTGATTACAACCCTTCTCTTGCTGCAGCACTTGGTCCAAGTCAACCCAATCCCAATCTGAACCTGGCTGCTGTTGGGTTAACGCCAGGTTCTGCTGGTGGACTTGAGGGTCCTGACCGTATCTTTGTGGGTGGACTTCCATACTACTTCACGGAAGCACAGATAAGGGAGCTGCTAGAATCCTTTGGCCCTCTTCGGGGTTTTGATCTAGTTAAGGACAGGGAAACAGGCAATTCCAAAGGTTATGCCTTTTGTGTTTACCAGGACCTGTCGGTTACGGACATTGCCTGTGCAGCCCTTAATGGAATCAAAATGGGAGATAAAACTCTCACTGTTAGGCGCGCAAACCAGGGCACTTCCCAGCCCAAACCTGAGCAGGAGAGTGTATTATTACAGGCACAACAGCAGGTATCATTGCAGAAGCTCTTGTTCCAAGCTGGAGCTGGTGGTGCCCTTCCTACCAAGGTTATCTGCCTAACGCATGTGGTCAGCGCAGATGAACTAAAAGATGATGATGAGTATGAAGACATAATGGAAGATATGAGAGGAGAAGGCGGGAAATATGGTACTTTGGTGAATGTTGTCATCCCGCGTCCGACCACAAATGGTGAACCATCTCCAGGAGTTGGAAAGGTTTTCTTGGAATATACTGATACAGATGGGGCAACAAAAGCTCGGGCAGGGTTGAATGGAAGGAAATTTGGTGGGAATCAGGTTGTGGCCATATATTATCCGGAGAATAAGTTCTCTCAGGGGCAGTACGACGGTTAG 1683 0.486 MPEYGGRYEGNGEEYDDYSQQKGSSHGGPDEYSDSKSRHGSRDYERESSKSRERGRERGREKERDRNRDRDRDRERDRDRDRRHRDHYRDRSDRRERGRDRDDDVDYYHSRDYERRRDYDRDRDGRHRHRSQSRSKSKGRSDHRSRSRSRSRSKSKRISGFDMAPPASAMLAGAAIAGQVPGTTPAIPGMFPNMFPLAPGQPFGTLPVMPVQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQGTSQPKPEQESVLLQAQQQVSLQKLLFQAGAGGALPTKVICLTHVVSADELKDDDEYEDIMEDMRGEGGKYGTLVNVVIPRPTTNGEPSPGVGKVFLEYTDTDGATKARAGLNGRKFGGNQVVAIYYPENKFSQGQYDG* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00197 560 Gene3D - 454 559 IPR012677 -
Eupl13g00197 560 FunFam U2 snRNP auxiliary factor large subunit 454 559 - -
Eupl13g00197 560 PANTHER RNA-BINDING PROTEIN 31 558 - -
Eupl13g00197 560 MobiDBLite consensus disorder prediction 117 163 - -
Eupl13g00197 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 421 IPR000504 GO:0003723
Eupl13g00197 560 MobiDBLite consensus disorder prediction 1 105 - -
Eupl13g00197 560 SMART rrm1_1 224 302 IPR000504 GO:0003723
Eupl13g00197 560 SMART rrm1_1 466 546 IPR000504 GO:0003723
Eupl13g00197 560 SMART rrm1_1 344 417 IPR000504 GO:0003723
Eupl13g00197 560 FunFam U2 snRNP auxiliary factor large subunit 320 433 - -
Eupl13g00197 560 FunFam U2 snRNP auxiliary factor large subunit 218 319 - -
Eupl13g00197 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 414 IPR000504 GO:0003723
Eupl13g00197 560 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 490 543 IPR000504 GO:0003723
Eupl13g00197 560 CDD RRM2_U2AF65 343 419 - -
Eupl13g00197 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 223 306 IPR000504 GO:0003723
Eupl13g00197 560 Gene3D - 218 319 IPR012677 -
Eupl13g00197 560 MobiDBLite consensus disorder prediction 128 154 - -
Eupl13g00197 560 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 465 551 IPR000504 GO:0003723
Eupl13g00197 560 CDD RRM3_U2AF65 458 545 - -
Eupl13g00197 560 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 45 558 IPR006529 GO:0003723|GO:0005634|GO:0006397
Eupl13g00197 560 SUPERFAMILY RNA-binding domain, RBD 344 552 IPR035979 GO:0003676
Eupl13g00197 560 Gene3D - 334 439 IPR012677 -
Eupl13g00197 560 CDD RRM1_U2AF65 222 304 - -
Eupl13g00197 560 MobiDBLite consensus disorder prediction 29 105 - -
Eupl13g00197 560 SUPERFAMILY RNA-binding domain, RBD 223 308 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00197 Eupl-Chr13 2702076 2711313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00197 345 539 Eukaryotic Initiation Factors Gene Family AT1G22760 25.000 7.76e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00197 K12837 - msin:131229365 717.613