Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00196 ATGCCCGTCGACTTAGAGAATTCGTCCGCCATGACTGTTTCTACGGCTTCTGGAGAAGCTAGCGTGTCTTCTTCTGGTAACCAAACGGCACCGCCATCAACAACAACGAAGAAAAAGAGAAATCTCCCCGGAATGCCAGATCCAGATGCGGAGGTGATCGCTTTGTCTCCTAAAACCCTAATGGCGACTAACCGATTTGTATGCGAGATCTGCAACAAAGGGTTCCAACGCGACCAGAACCTGCAACTCCACCGCCGCGGCCACAATCTTCCATGGAAGCTCAGGCAGCGGACGAGCAAAGAGATTCGTAAGCGCGTCTATGTCTGCCCCGAGACCTCATGCGTTCATCACGACCCAACGAGAGCTTTAGGCGATCTTACAGGGATTAAGAAGCATTTTTGCCGGAAACACGGCGAGAAGAAATGGAAATGCGACAAGTGTTCGAAGAAATACGCTGTTCAATCCGATTGGAAGGCGCATTCGAAGACTTGTGGGACGAGAGAGTACAGATGCGATTGTGGAACTTTATTCTCTAGGAGAGATAGCTTCATCACACACAGGGCTTTCTGCGATGCGTTAGCAGAAGAGAGCGCGAGAGCTCATACTGTAGCGAATTCGAATTCAGAAGAAGATCCGAAGCTTCAGAGGGTTGCTGTTTCATCTCCTCCTCCGTCGTCTTCTGTGATTTCTGCGTTTTTGCCAACTCAAAATCCAGAGCTGCCGGAAAATCACACCGGAATCTTACACAATATCCCGCCGGCGAATTGTGTGAATAATGGAAATAGTAGTAGTAGCTCCAGTAATGGTAGTAGCAGTAACAGTGTGTTTGGAAGTCTATTTGGTTCGTCGTCGACCGTCGGGAACTTGCAGCCCCAAACCTCTGCGTTTTCTGATTTAATTTGCGCTATGGCACGTTCTGAGCGGCCCACCACACTGGCATCGGCATCGGCAACAGAACCCACATCACTCTGCCTGTCTAACAACAGTTCGACACTGTTTGCCCCGGCAGGGCAAGAGGGTCGGCAATTCGCTCCACCACCACAACCTGCTATGTCCGCAACTGCGTTGCTTCAGAAAGCAGCGCAGATGGGTGCAGCTGCCACAAATGCATCGTTGCTTCGTGGATTTGGGATATCAGTGAGTTCTCCATCAGGGCAGCACGAGAGCTTACAGTGGAACCGACACATCGAAGCTGATACTAGTGCTGCAGCTGCTGGACTTGGACTTGGGCTTCCCTGCGATGGCAGTGCTGGGTTGACGGAATTGATGATGGGTCCATCTTCGCTGTTTGGGCCAAAACCAACAACGCTCGATTTTCTCGGATTGGGAATGGCTAGTGGTGGCACTCCTACTGGGGGGCTTTCGGCCTTAATCACGTCGATTGGAGGTGGTCTTGATGTCGCAGCATTTGGAGGTGGGAATTCAGAGATAGGAAGGAACAATGAGAGAAAGCCGAGTAGTCCTGCATTGCTATAG 1476 0.5095 MPVDLENSSAMTVSTASGEASVSSSGNQTAPPSTTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKRVYVCPETSCVHHDPTRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAHTVANSNSEEDPKLQRVAVSSPPPSSSVISAFLPTQNPELPENHTGILHNIPPANCVNNGNSSSSSSNGSSSNSVFGSLFGSSSTVGNLQPQTSAFSDLICAMARSERPTTLASASATEPTSLCLSNNSSTLFAPAGQEGRQFAPPPQPAMSATALLQKAAQMGAAATNASLLRGFGISVSSPSGQHESLQWNRHIEADTSAAAAGLGLGLPCDGSAGLTELMMGPSSLFGPKPTTLDFLGLGMASGGTPTGGLSALITSIGGGLDVAAFGGGNSEIGRNNERKPSSPALL* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00196 491 Gene3D Classic Zinc Finger 120 200 - -
Eupl13g00196 491 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Eupl13g00196 491 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 449 IPR031140 -
Eupl13g00196 491 FunFam protein indeterminate-domain 12-like 45 113 - -
Eupl13g00196 491 SMART c2h2final6 142 162 IPR013087 -
Eupl13g00196 491 SMART c2h2final6 107 137 IPR013087 -
Eupl13g00196 491 SMART c2h2final6 66 88 IPR013087 -
Eupl13g00196 491 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Eupl13g00196 491 MobiDBLite consensus disorder prediction 1 46 - -
Eupl13g00196 491 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Eupl13g00196 491 MobiDBLite consensus disorder prediction 201 227 - -
Eupl13g00196 491 MobiDBLite consensus disorder prediction 472 491 - -
Eupl13g00196 491 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Eupl13g00196 491 MobiDBLite consensus disorder prediction 7 40 - -
Eupl13g00196 491 Gene3D Classic Zinc Finger 46 115 - -
Eupl13g00196 491 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00196 Eupl-Chr13 2684666 2688159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00196 1 479 IDZ Gene Family AT5G66730 57.061 3.24e-177 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g00196 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00196 K25869 - nnu:104595745 730.709