Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00188 ATGAATGAAGTAGACGATCAAATGTTACTCATGATCTCTCAACTATATCCTGGTCTGTACACCCATCTGGTGCCAGGAGCAGGAGAGAAGAGATCGCGTCGAAGGAGAAAGAAGAACAAAGAAGAAGCAAGTGGGTTTGGAGGAGGAAGGAAAAGGAAGTTGAGTGAGGAGCAGGCGAAGCTTCTGGAAGTGAACTTCGGTAGCGAACACAAGTTGGAGACTGAGAGAAAGGACCGTCTTGCTTCGGAGCTGGGGTTAGACCCTCGACAAGTCGCCGTTTGGTTCCAGAATAGAAGGGCCAGGTGGAAGAGCAAGAAGCTTGAGGAAGAGTACTTGAAGCTCAAGACTGCTCATGAAGGTGTCATCGTTGAGAAGTCCCGACTCGAATCCGAGGTATTGAAGCTGAAGGAACAGCTGTCGGAGGCGGAGAAGGAAGTACAGAGGCTATCGGCCGAGCGGTCGGATGGAGTCGCGAGCAGTAGCCCAAGTTCATCTTTTTCAATGGATGCGGAACCACATTTTCTCGGAGAATTCGGGGTGGAATTATTTGATAGTCTGTTTTATGTAGCTGAAAATAATTATATTCATGGTATGGAGTGGGTGGATTTATATGGATTGTGA 621 0.4783 MNEVDDQMLLMISQLYPGLYTHLVPGAGEKRSRRRRKKNKEEASGFGGGRKRKLSEEQAKLLEVNFGSEHKLETERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYLKLKTAHEGVIVEKSRLESEVLKLKEQLSEAEKEVQRLSAERSDGVASSSPSSSFSMDAEPHFLGEFGVELFDSLFYVAENNYIHGMEWVDLYGL* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00188 206 MobiDBLite consensus disorder prediction 39 54 - -
Eupl13g00188 206 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Eupl13g00188 206 Gene3D - 47 111 - -
Eupl13g00188 206 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Eupl13g00188 206 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Eupl13g00188 206 CDD homeodomain 50 106 IPR001356 GO:0003677
Eupl13g00188 206 MobiDBLite consensus disorder prediction 146 166 - -
Eupl13g00188 206 SUPERFAMILY Homeodomain-like 49 106 IPR009057 -
Eupl13g00188 206 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 37 164 IPR045224 GO:0003700
Eupl13g00188 206 MobiDBLite consensus disorder prediction 26 54 - -
Eupl13g00188 206 Pfam Homeodomain 51 103 IPR001356 GO:0003677
Eupl13g00188 206 ProSiteProfiles 'Homeobox' domain profile. 50 105 IPR001356 GO:0003677
Eupl13g00188 206 SMART HOX_1 48 109 IPR001356 GO:0003677
Eupl13g00188 206 FunFam homeobox-leucine zipper protein ATHB-40 44 113 - -
Eupl13g00188 206 Coils Coil 125 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00188 Eupl-Chr13 2594420 2596198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00188 4 204 Homeobox Transcription Factor Family AT4G36740 57.547 5.77e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Eupl13g00188 Homeodomain 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00188 K09338 - nnu:104595754 273.478