Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00168 ATGGCCAGTGGGTATGGGGAGTCAACCAGCAAACCGCCCCAAAGCCCTTCTTGCTCAGGCAGCAGTAGCAATGATGCTGGTAGTTTCGAATGCAATATCTGCTTTGAATTAGCTCAAGATCCAATCGTGACTCTATGTGGCCACCTCTTCTGTTGGCCTTGCCTTTACAAGTGGCTCCATATTCACTCGCATTCCCAGGAATGCCCTGTTTGTAAAGCCCTCATACAGGAAGAGAAATTGGTTCCCCTTTATGGCAGGGGAAAAACGCCAACAGATCCAAGATCTAAGTCAATTCCTGGTATTAATATACCTAATCGTCCAGCAGGTCAGAGGCCCGAAACAGCCCCTCCTCCAGACCCAAATCATTTCCCTCAGCATGGGTTTGGGTTCACAGGGGGATTCGCACCAATGGCAACTGCGAGGTTTGGGAACTTCACACTGTCTGCGGCTTTTGGTGGTCTGATTCCATCACTGTTTAATCTACAGGTGCATGGATTCCCCGATGCTACTATGTATGGGGCAGCTGCTGGTTTTCCCTATGGATTTTCTAATTCTTTTCATGGAGGTCATGCTCATGGGTTCCCACAGCCCACAAGTCAAGGGCAACAGGCGGATTCCTATTTGAAGATGCTGTTTTTGATGGTTGGTGTCTTTGTGATCCTTGCTCTTGTTTGGTCATAG 681 0.4846 MASGYGESTSKPPQSPSCSGSSSNDAGSFECNICFELAQDPIVTLCGHLFCWPCLYKWLHIHSHSQECPVCKALIQEEKLVPLYGRGKTPTDPRSKSIPGINIPNRPAGQRPETAPPPDPNHFPQHGFGFTGGFAPMATARFGNFTLSAAFGGLIPSLFNLQVHGFPDATMYGAAAGFPYGFSNSFHGGHAHGFPQPTSQGQQADSYLKMLFLMVGVFVILALVWS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00168 226 MobiDBLite consensus disorder prediction 1 21 - -
Eupl13g00168 226 SUPERFAMILY RING/U-box 28 84 - -
Eupl13g00168 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
Eupl13g00168 226 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Eupl13g00168 226 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 15 85 - -
Eupl13g00168 226 SMART ring_2 31 71 IPR001841 -
Eupl13g00168 226 MobiDBLite consensus disorder prediction 85 119 - -
Eupl13g00168 226 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Eupl13g00168 226 CDD RING-HC_AtRMA-like 29 73 - -
Eupl13g00168 226 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Eupl13g00168 226 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 221 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00168 Eupl-Chr13 2262801 2265372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00168 16 209 C3H Transcription Factor Family AT1G19310 66.986 1.23e-91 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00168 K10666 - nnu:104590139 441.039