Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00149 ATGGGGGATTTCATATGCAGTGATGAAGAAGATTATTGGTCTGATCGAGACTCGCTCGATGGGATCGAGAACGAAGAAGATGAGTTTCAATGGCCGTCTCCGAGTATTCCGTCGAGTAAGGTAATCACAAAAGAATCTCTTTTGGCAGCTCAGAGGGAAGATTTGCGTAGGGTAATGGACTTGCTAAAGCTAAGTGAACAACACGCACGGACTTTACTTATTCATCATCGTTGGGACGTTGAGAAGTTGTTTGCAGTGCTTGTAGAGAAGGGAAAAGATCGGTTATTTGCTGAAGCTGGAGTGAATGTGCTTGAGCGTAAAATTTATGCCTCGTCCCAGTCCTCTTCAATGGTAATGTGCAATATCTGCATTGAGGAGATTTCTGCCAATGTGGTTACAACAATGGACTGCAGCCACTGCTTTTGCAACAATTGTTGGACGGAGCATTTTATTGTAAAAATTAATGAAGGGCAAAGTAGGCGCATTAGGTGCATGGAGCACAAGTGCAATGCTATTTGCGATGAAGCTATTATCAGAAATCTAGTCAGTGCGAGGGATCCTGGTCTGGCAGAGCGCTTTGAACGTTTTCTTTTAGAGTCATATATTGAGGACAATAAAATGGTCAAATGGTGCCCTAGTGTACCACATTGTGGTAAGGCAATACGTGTTGAGGATGATGAATATTGCGAGGTTGAATGTGCATGTGGGCTACAATTCTGTTTCAGATGCTCATCAGAAGCACACTCCCCTTGTTCATGCCTGATGTGGGAGCTTTGGACCAAGAAGTGCCGGGATGAATCAGAGACGGTTAATTGGATTACTGTCAACACAAAGCCTTGCCCGAAGTGTCACAAACCTGTTGAGAAGAATGGTGGCTGCAACCTAGTGAGCTGTATCTGTGGACAAGCATTTTGTTGGTTGTGTGGCGGAGCTACTGGCCGAGACCACACGTGGTCAAGTATCAGCGGCCATAGCTGTGGGCGCTACAAAGAAGAACGAGAGAAGAAAGCTGAGCGTGCAAAGCAGGACCTCAATCGGTACATGCACTATCACAACTTCTACAAAGCTCATACGGATTCTTTTAAGCTCGAAACAAGACTCAAGGAAACAATACAGGATAAAATATCAATTTTGGAAAGCAAGGACTCCACACTCAAAGATTTTGGTTGGGTAACAAATGGACTCTACAGACTCTTCAGATCAAGGCGGGTTCTATCATATTCGTACCCGTTTGCATATTACATGTTTGGGGATGACCTCTTCAAGGATGAGATGACTAAGGATGAAAGGGAATTAAAACAACATCTATTTGAGGACCAGCAGCAGCAGCTTGAAGCAAATGTGGAGAAGCTATCTAAGTTTATAGAGGAGCCATTTGATCAATATACCGAGGATAAAGTCATGGAGATGAGGATGCAAGTCATCAATCTGTCTGTGATCACTGATACACTGTGTAAAAAAATGTATGAATGCATCGAGAATGATTTATTGGGTTCCCTCCAACTGGCAAACCACAATATTGCTCCCTACAAATCAAAGGGTGTTGAGAGGGCGTCAGAACCTGTCTGGAGCACTAAAACCAATTCTACTGACTATCGTCGATCACATTCGAGCATAAGTGGAGGAACAATGGAATCCGATCGGCCTTCTTCTGCCTCCCCAAATTTTGAGAGTGGATGCTCTTCTCGGAAGCGCCCTCGGAGAGAAGCTCTTGGAGATGGCCTCTTTGATCTCAACTTGCCTGCGGAGGTGATCGACAAAAGCTGA 1767 0.4443 MGDFICSDEEDYWSDRDSLDGIENEEDEFQWPSPSIPSSKVITKESLLAAQREDLRRVMDLLKLSEQHARTLLIHHRWDVEKLFAVLVEKGKDRLFAEAGVNVLERKIYASSQSSSMVMCNICIEEISANVVTTMDCSHCFCNNCWTEHFIVKINEGQSRRIRCMEHKCNAICDEAIIRNLVSARDPGLAERFERFLLESYIEDNKMVKWCPSVPHCGKAIRVEDDEYCEVECACGLQFCFRCSSEAHSPCSCLMWELWTKKCRDESETVNWITVNTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSISGHSCGRYKEEREKKAERAKQDLNRYMHYHNFYKAHTDSFKLETRLKETIQDKISILESKDSTLKDFGWVTNGLYRLFRSRRVLSYSYPFAYYMFGDDLFKDEMTKDERELKQHLFEDQQQQLEANVEKLSKFIEEPFDQYTEDKVMEMRMQVINLSVITDTLCKKMYECIENDLLGSLQLANHNIAPYKSKGVERASEPVWSTKTNSTDYRRSHSSISGGTMESDRPSSASPNFESGCSSRKRPRREALGDGLFDLNLPAEVIDKS* 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00149 588 ProSiteProfiles Zinc finger RING-type profile. 120 168 IPR001841 -
Eupl13g00149 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 367 IPR031127 GO:0004842|GO:0016567
Eupl13g00149 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 206 IPR013083 -
Eupl13g00149 588 MobiDBLite consensus disorder prediction 521 560 - -
Eupl13g00149 588 SUPERFAMILY RING/U-box 191 259 - -
Eupl13g00149 588 SMART ibrneu5 261 326 IPR002867 GO:0008270
Eupl13g00149 588 SMART ibrneu5 191 253 IPR002867 GO:0008270
Eupl13g00149 588 Gene3D - 249 497 - -
Eupl13g00149 588 Pfam IBR domain, a half RING-finger domain 268 311 IPR002867 GO:0008270
Eupl13g00149 588 Pfam IBR domain, a half RING-finger domain 191 253 IPR002867 GO:0008270
Eupl13g00149 588 SUPERFAMILY RING/U-box 115 203 - -
Eupl13g00149 588 CDD Rcat_RBR_ARI1-like 274 327 - -
Eupl13g00149 588 ProSiteProfiles TRIAD supradomain profile. 116 330 IPR044066 -
Eupl13g00149 588 MobiDBLite consensus disorder prediction 518 572 - -
Eupl13g00149 588 FunFam RBR-type E3 ubiquitin transferase 249 497 - -
Eupl13g00149 588 SUPERFAMILY RING/U-box 261 326 - -
Eupl13g00149 588 Pfam Ariadne domain 330 588 IPR045840 -
Eupl13g00149 588 CDD RING-HC_RBR_TRIAD1 118 171 - -
Eupl13g00149 588 FunFam RBR-type E3 ubiquitin transferase 114 205 - -
Eupl13g00149 588 CDD BRcat_RBR_ANKIB1 198 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00149 Eupl-Chr13 2065229 2071733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00149 59 520 ARIADNE family AT2G16090 74.138 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00149 K11968 - nnu:104595795 996.497