Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00117 ATGGCGTCGTCGTCGAATTCCCCTTGTGCGGCGTGTAAGTTCCTTAGGCGCAAGTGCACTCAGGAGTGCGTATTTGCCCCCTATTTCCCACCGGATCAACCACAGAAGTTTGCTAACGTGCACAAGGTATTCGGTGCCAGCAACGTCGCCAAGCTTCTCAACGAGCTAAACCGAGCGCAGAGAGAAGACGCAGTGAACTCCCTCGCTTACGAGGCAGAGGCTCGGCTTCGAGATCCTGTTTATGGCTGCGTTGGCCTCATATCCATTCTCCAACACAAGCTCAAACAAGTCCAAAACGATCTCTACAATGCCAAGAAAGAGCTCTCCTCCTACATCGGCCCATCAGCAATGATTCCCGTCAGCCACCAACAACACCATCACCACAACCCTATTTCCTCCACGAGCCCATTTGGAATGTCTTCGGTGGGCCTTGGTCCTTCGCCACAGGCCCAGTTACTGATCCGTGAGCAGCAGCAGCAGCAGATGCTCGAGGCTCAGCAATTGGCGGTTGTTGTTGCTGCAAGGGAACAAGAGATGATGAGGAGCTACGAGCAGCAGCAGCAGCAAGAGCTTGTGAGGTTTAATAGCGGGTTTGATGCGAGCAGTGGTGGCGGTGCCGGTATTAGTGGGTTTAACCAGATGAGTGCGGCGTTGCCGTCATCGATGGCTATGGTTCCATTCAGTAACTTGTTTCAGGTGCAGCAACAGCAAAATCAGCTGCCGCATCAACAGCTTCTGAAGAGAGAGGAGAACGAGGACGGTACCTGCGTTGGTCGTCCGTCTTCTTAA 789 0.5336 MASSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNRAQREDAVNSLAYEAEARLRDPVYGCVGLISILQHKLKQVQNDLYNAKKELSSYIGPSAMIPVSHQQHHHHNPISSTSPFGMSSVGLGPSPQAQLLIREQQQQQMLEAQQLAVVVAAREQEMMRSYEQQQQQELVRFNSGFDASSGGGAGISGFNQMSAALPSSMAMVPFSNLFQVQQQQNQLPHQQLLKREENEDGTCVGRPSS* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00117 262 Coils Coil 87 107 - -
Eupl13g00117 262 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 159 - -
Eupl13g00117 262 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Eupl13g00117 262 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00117 Eupl-Chr13 1588397 1591501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00117 1 217 AS2 family AT5G66870 58.065 6.00e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Eupl13g00117 LOB 4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00117 - - ming:122073025 328.561