Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00116 ATGGGTTCGAGTTCGCCGGAACTGAGCTTAGATTTCAAACCCACGTACACGCCCAAAACCATTAGCTGTTTTCTGGGAGAAATTTCGACGATCGGAAACATTTCTGAGAGGCTATCGAAGCTCAACGAGTATGTTAACAGGTTAGAAGAAGAAATGAGGAAGATTGACGCCTTTAAACGCGAACTTCCTCTCTCCATGCTTCTCATAAGCGATGCTATTGTAGCGTTGAAGGAAGGAACAATGCAGTGTACGACATCGGATGTTCAGCCTGTAATGGAAGAATTCATTCCATTAAAGAGGAATTCTGATGAAGATGGTAGGGTAAAAAAGGAAAAAGATTCCAGAGATAAGAAGAACTGGATGAGCTCTGCTCAGCTCTGGAACAGTAATGGTGATTCTGATTCTAATATCAGTAACTATAAGAAACAAGGATCAGTAGAGAGAATTGATGAAGAAGATCGCTCTGCTACTACAGAGAACCAATTTCTTCCATGCAAATACTGGATTGGAGGAGGGGCATTTATGCCATTTAAGGGGTTTTCTGGTTTTCCAGCAACTATGACCGGGAAGGAAGACAGAGAGATTCAACCAGTACAAAACCTTTCTCTTATGACTCCTGGAACTAAGATTCCAAGCGCTGAACCAAGTTCTGGAAGTTCTAATTTGAAGAGCAGCGACAGTACCAAGGTTCTTCAATCTTCATTGACGGGGAATGGTCAATCAAATTTACAGATGCCCACGCAGCAGCCTCTGAAGAAGCAAAGGAGATGCTGGTCGCCCGAATTACATCGGCGTTTTGTCGGTGCCTTGCAACAGCTTGGGGGTTCACAAGTAGCTACTCCAAAACAAATTAGAGAGCTGATGAAGGTCGACGGCCTCACCAACGACGAAGTGAAGAGCCATTTGCAAAAATATCGACTTCACAATCGAAGATTAGCCCCTGCAAATGAACCAGTTGTTGTTTTGGGAGGATTATGGGTGCCCCAGGATCAGTATGGAGCCTCGAAAGCAAGCACATCACAGTCTGGTTCTCCCCAAGGCCCTCTCCAGTTAGCAGGGGCAGCTGGAGGGATCTCCACTACAGGCGGCGACAGCATGGAAGACGAAGAAGATGGAAGATCGGAGAGCTATAGTTGGAAAGGTCACCTTCACAAACCAGGGGAAGATGATGAATAG 1176 0.4541 MGSSSPELSLDFKPTYTPKTISCFLGEISTIGNISERLSKLNEYVNRLEEEMRKIDAFKRELPLSMLLISDAIVALKEGTMQCTTSDVQPVMEEFIPLKRNSDEDGRVKKEKDSRDKKNWMSSAQLWNSNGDSDSNISNYKKQGSVERIDEEDRSATTENQFLPCKYWIGGGAFMPFKGFSGFPATMTGKEDREIQPVQNLSLMTPGTKIPSAEPSSGSSNLKSSDSTKVLQSSLTGNGQSNLQMPTQQPLKKQRRCWSPELHRRFVGALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHNRRLAPANEPVVVLGGLWVPQDQYGASKASTSQSGSPQGPLQLAGAAGGISTTGGDSMEDEEDGRSESYSWKGHLHKPGEDDE* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00116 391 Pfam Myb-like DNA-binding domain 255 306 IPR001005 -
Eupl13g00116 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 252 310 IPR017930 -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 99 119 - -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 99 156 - -
Eupl13g00116 391 Gene3D - 252 310 - -
Eupl13g00116 391 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 7 380 IPR044787 GO:0003700|GO:0006355
Eupl13g00116 391 MobiDBLite consensus disorder prediction 204 256 - -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 204 254 - -
Eupl13g00116 391 FunFam Myb family transcription factor 252 310 - -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 334 391 - -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 372 391 - -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 120 143 - -
Eupl13g00116 391 Coils Coil 31 61 - -
Eupl13g00116 391 MobiDBLite consensus disorder prediction 334 348 - -
Eupl13g00116 391 NCBIfam myb-like DNA-binding domain, SHAQKYF class 253 308 IPR006447 GO:0003677
Eupl13g00116 391 SUPERFAMILY Homeodomain-like 251 311 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00116 Eupl-Chr13 1578007 1580439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00116 3 334 G2-like Transcription Factor Family AT2G03500 39.193 1.68e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl13g00116 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00116 - - nnu:104601936 511.916