Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00104 ATGATCCCAAGTGCGATAATAAATAAAGACCCACGACCTGCGCTCTCGAGACGCGCCATAAACGGTAGAGCTCATTCTGCAACTCTTCTGTTCTACTTTCTCCCACTGTTCTTCATGGCTCTTTCTACTTTCTTACCAACAACCAAACAAGCTACCAAAAACAAGAGAAAACAGGAAAATCAACCCTCTTCATGGGACCAAATCAAGAGCCTATTCACCTGTAAACTGATCGAAGGGTCACAAGTTCACGACCCATCGAAGAATGTTGTTGATTATTCGAAGTTTGGTTCTTCTTGTAGTTCTATCTGTAGTTTCAGAGATATTGTTCATGGAAACAGGAGAGTGGTGCACAGAGCTGATAACTCGCCGGAGAGTAGCACTGTGGGTCAGGAAGCCGGACTTTTGAGTCGGAAAGTGGTGACTGAGTCATCAACTCGGTCATCTTTGCGTTTGATAAGATCAAACGGTGGCGGTGGAGAGTACTCGTCGTCATCGAGAGGAATGCAATTACGGAAACTTTCTGGGTGTTACGAATGCCATATTATCGTTGAGCCTAGCAAGCACCCATCACGGAGGTCTACTGTCTGTGCTTGCTCTGAGTGTGGAGAGGTCTTTCCCAAGATTGAAAGCATGGAACTTCATCGAGCTGTAAGACATGCAGTTTCGGAGCTGGGGCCAGAAGATTCAGGCCGGAACATCGTGGAGATAATCTTCAAATCAAGCTGGCTGAAGAAAGACCATCGGATCTGCAATATAGAACGGATATTAAAAGTTCACAACAGCCAGTCCACCATCCAACGGTTCGAGGAATACCGAGAAGCTGTCAAGGCACATGCCAACAACAATACCAAGAAAAACCCAAGGTGCCCAGTCGACGGTAATGAACTACTGAGGTTCCACTGCACAACATTAACCTGCGCACTTGGCGCACGCTGCTCCTCTAGCCTATGCAGCTCCATACCGGGCTGCGGGGTGTGCACTATCATCAGGCACGGGTTTCCGGGGAAAGTGCACGATTGCAAGGGGACGCGCACTACAGCCAGCAGTGGTAGGGCTCACGATTGTTTGAGCAGTACGGACGGGAGGAGAGCCATGCTCGTGTGTCGGGTGATCGCTGGAAGGGTGAAGCATATCGCTGAATCAGATGCGCTTGCGGAGGAGGAGAGCGTGTCGGCTGACATGTACGATTCGGTCGCTGCGTACGCCGGGATTTACACGAATCTCGAGGAGCTAATCGTTTTCAATCCCAAGGCTATCCTTCCGTGTTTTGTCGTGATCTACAAAGCCCTGTGA 1293 0.4934 MIPSAIINKDPRPALSRRAINGRAHSATLLFYFLPLFFMALSTFLPTTKQATKNKRKQENQPSSWDQIKSLFTCKLIEGSQVHDPSKNVVDYSKFGSSCSSICSFRDIVHGNRRVVHRADNSPESSTVGQEAGLLSRKVVTESSTRSSLRLIRSNGGGGEYSSSSRGMQLRKLSGCYECHIIVEPSKHPSRRSTVCACSECGEVFPKIESMELHRAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDHRICNIERILKVHNSQSTIQRFEEYREAVKAHANNNTKKNPRCPVDGNELLRFHCTTLTCALGARCSSSLCSSIPGCGVCTIIRHGFPGKVHDCKGTRTTASSGRAHDCLSSTDGRRAMLVCRVIAGRVKHIAESDALAEEESVSADMYDSVAAYAGIYTNLEELIVFNPKAILPCFVVIYKAL* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00104 430 Gene3D - 220 429 - -
Eupl13g00104 430 ProSitePatterns Zinc finger C2H2 type domain signature. 196 219 IPR013087 -
Eupl13g00104 430 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 63 427 - -
Eupl13g00104 430 SUPERFAMILY ADP-ribosylation 221 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00104 Eupl-Chr13 1360339 1362164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00104 39 430 C2H2 Transcription Factor Family AT1G75710 59.091 1.37e-162 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl13g00104 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00104 - - nnu:104605577 605.52