Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00088 ATGGATCAATGGAAGGCCGAGGGTTTTTGTCAATCTATTCAAGCGGATCTAGCCGTTACAGAGTTTCATCAGCCTCCTCCCGATCTCTGTGTGCCCTCCAATCGGTTGCAGAACTCGCATCCCGAGTCCAGCCAAAGGCCGGAAGTGGAAGTCAAGGATTCCATTGCTGCGAGAAAAATGCAGAAGGCAGACCGTGAGAAATTGAGGAGGGATCGACTAAATGAGCAGTTTATTGAGTTGGGAAATGCACTAGACCCTGATAGGCCCAAGAATGACAAAGCAACCATCCTAACTGATACAATCCAAATGCTGAAAGATATGATTGCTCAAGTCAGCAGACTGAAGGCTGAGTACACAACGCTCTCCGAAGAATCACGTGAGTTGACACAGGAGAAGAATGAGCTGAGAGAAGAGAAGGGGTCCCTAAAATCTGATATCGACAACCTTAATGTTCAGTATCAGCAAAGACTCAGGGTTTTGTTTCCATGGGCTGCTATGGATCCTTCAGTTGTAATGGGCCCACCTTCCTATCCGTTCCCAATGCCGGTTCCTGTTCCTGCAGGCCCAATTCCCATTCATCCATCTATGCAGCCGTTCCCCTTCTTTAGAAATCAAAATCCTGGGGCCATTCCCAATCACTGTTCAACTTTTATCCCATATTTGTCTCCTGGTACTCATCAGATCGATCAGCCATCCGCCCAATACGCATCCCCACATCTGCAGCCAAACAGTAGGTCCCACACTTCAAGCAAACAAGATTCCAAAAGCAAGTCATTGGATCGTCAGAAGGGCGGCAACATCGAAAGAAGTGATGATTCTAATGATGTAGCAACAGAGTTGGAACTCAAGACACCTGGATCTACAGTAGACCAGGAGTTGTCATCTGGAGAGAGGAAAGGCGAACTGTCGCAGAAGAAGGGAAGTAGTGTTACAGTTGGAAGCTGTTCGAGCAGGTGTTCTTCATCTCGAGGTGTACAGGATAGCTCCTCCAATAGTGTGGGTGATGGTCCGTCCAAAGGCTGA 1023 0.478 MDQWKAEGFCQSIQADLAVTEFHQPPPDLCVPSNRLQNSHPESSQRPEVEVKDSIAARKMQKADREKLRRDRLNEQFIELGNALDPDRPKNDKATILTDTIQMLKDMIAQVSRLKAEYTTLSEESRELTQEKNELREEKGSLKSDIDNLNVQYQQRLRVLFPWAAMDPSVVMGPPSYPFPMPVPVPAGPIPIHPSMQPFPFFRNQNPGAIPNHCSTFIPYLSPGTHQIDQPSAQYASPHLQPNSRSHTSSKQDSKSKSLDRQKGGNIERSDDSNDVATELELKTPGSTVDQELSSGERKGELSQKKGSSVTVGSCSSRCSSSRGVQDSSSNSVGDGPSKG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00088 340 MobiDBLite consensus disorder prediction 305 340 - -
Eupl13g00088 340 MobiDBLite consensus disorder prediction 221 340 - -
Eupl13g00088 340 MobiDBLite consensus disorder prediction 221 249 - -
Eupl13g00088 340 Pfam Helix-loop-helix DNA-binding domain 58 107 IPR011598 GO:0046983
Eupl13g00088 340 PANTHER TRANSCRIPTION FACTOR BHLH121 31 337 IPR044579 GO:0003700|GO:0006879
Eupl13g00088 340 Coils Coil 56 76 - -
Eupl13g00088 340 SMART finulus 63 113 IPR011598 GO:0046983
Eupl13g00088 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 127 IPR036638 GO:0046983
Eupl13g00088 340 Coils Coil 104 152 - -
Eupl13g00088 340 Gene3D - 55 158 IPR036638 GO:0046983
Eupl13g00088 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Eupl13g00088 340 CDD bHLH_AtILR3_like 62 136 - -
Eupl13g00088 340 MobiDBLite consensus disorder prediction 250 278 - -
Eupl13g00088 340 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00088 Eupl-Chr13 1144075 1151774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00088 48 292 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.258 3.43e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g00088 HLH 2.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00088 - - nnu:104600134 500.745