Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00087 ATGGATGACGGTGAAACCCCTAATTCTGTGACGGAAGCCGAATCCGAAGACGGATCGAATTTGGCTCCGTCTCGGCAGTCTTCAAGAACGCCATTCACGAACCTCAGTCAAGTCGATGCGGACCTCGCGCTCGCCCGGACTTTACAGGAGCAGGAGAGGGCATATATGATGCTGCGTATGAACGGTGAAGTTAGTGATTACGGAAGTTCAGAAACTGGAAGTTATGTGTACGAAGACGATGTTGATGATCTGGATGACGATGAAAATGCTGGGACTAATGACGATGAAGATGCATTTGATGTGCATGCACATGCTGATGCGGTGGATAATAACCATGGTGTCGAACTTGATCCGTTGGCTGCCAACAGTGACGAGGCATATGCAAGAGCCCTCCAGGATGCTGAAGAACGAGAAATGGCTGTTCACTTGATGGCCCTTGCGGGGATAAATGATTGGGAAGCAGAGGATACTGAGGATCATGGCAGTAATTCTCAGGATACGTGGGAGGAAGTTGATCCAGATGAACTGTCATATGAGGAATTGCTTGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGACTTTCTGCAGATACAATTGCCTCTTTGCCTTCAGTTAATTACAAAGCACAAAACAATCAAGATGGAAGCACTGATCAATGTGTCATTTGCCGGGTGGACTATGAGGATGGTGAGACCTTGACCGTGCTTTCATGCAAGCATTCATACCACTCTGAGTGCATAAACAATTGGCTTCGAATAAACAAGGTATGTTTAATTCTATGTAATGCGGACATGGCAATTTTTCTATTGTTGGCCATGACGACACGTATCGATATGGATATGGATATGCATGTCCACATTCAGGCACACATCCCGACGCATATTGCAATGTCTCCTTTTATTTTAATATATTTTCTAAAAGAATAA 930 0.4505 MDDGETPNSVTEAESEDGSNLAPSRQSSRTPFTNLSQVDADLALARTLQEQERAYMMLRMNGEVSDYGSSETGSYVYEDDVDDLDDDENAGTNDDEDAFDVHAHADAVDNNHGVELDPLAANSDEAYARALQDAEEREMAVHLMALAGINDWEAEDTEDHGSNSQDTWEEVDPDELSYEELLALGEVVGTESRGLSADTIASLPSVNYKAQNNQDGSTDQCVICRVDYEDGETLTVLSCKHSYHSECINNWLRINKVCLILCNADMAIFLLLAMTTRIDMDMDMHVHIQAHIPTHIAMSPFILIYFLKE* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00087 309 ProSiteProfiles Zinc finger RING-type profile. 221 258 IPR001841 -
Eupl13g00087 309 MobiDBLite consensus disorder prediction 1 37 - -
Eupl13g00087 309 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 10 265 IPR043312 -
Eupl13g00087 309 MobiDBLite consensus disorder prediction 76 94 - -
Eupl13g00087 309 Pfam Ring finger domain 219 260 IPR001841 -
Eupl13g00087 309 MobiDBLite consensus disorder prediction 11 37 - -
Eupl13g00087 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 268 IPR013083 -
Eupl13g00087 309 MobiDBLite consensus disorder prediction 64 94 - -
Eupl13g00087 309 SUPERFAMILY RING/U-box 220 259 - -
Eupl13g00087 309 FunFam E3 ubiquitin ligase BIG BROTHER-related 187 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00087 Eupl-Chr13 1137170 1142170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00087 22 165 C3H Transcription Factor Family AT3G19910 52.903 2.20e-38 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00087 K19045 - nnu:104600135 408.297