Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00067 ATGGCGCAGGGAAGCAGATCGACCGGAGTTGTGAAGTGGTTCAACGGCCAGAAGGGCTTTGGATTCATCACTCCTGACGACGGTGGCGAAGATCTGTTCGTCCATCAGTCCTCGATCAAATCCGAGGGATTCCGTAGCCTCGCTGAAGGAGAGGCCGTGGAGTACCAGGTCGAGTGCGGAGATGACGGCAGGACGAAGGCCGTCGATGTGAGCGGTCCGGACGGGTCTTTCGTGCAGGGAAGCAGAAGAGACGGCTTTGGCGGTGGCGCCGGTGCTGGTGGTGGTAGAGGTGGTCGCGGAGGCGGCGGTGGTTACGGAGGTGGTTACGGTAGCGGAGGCGGCGGTGGGTACGGTAGCGGAGGTGGCGGTGGGTACGGGTTCAACGGCGGAGGGAGAGGTGGTGGTGGTAGGGGAGGAAGAGGTGGTGGAGGGAGAAATGGTGGTGGGTATGGCAGTGGAGGTGGTGGTGGTGGCGGCGGCGGCTCTTGTTACAACTGCGGCGAGCCGGGACATTTGGCAAGGGACTGTTATCAGGGAAGCGGCGGCGGCGGCGGCGGTGGTGGTGGAAGGTTCGGCGGAAGCGGAGGTGGTGGCGGTGGAGGCTGCTACAACTGTGGGGAGGAAGGGCATTTCGCCAGAGAATGCCCTAGCAGCAATTCCATGAAGTGA 669 0.6293 MAQGSRSTGVVKWFNGQKGFGFITPDDGGEDLFVHQSSIKSEGFRSLAEGEAVEYQVECGDDGRTKAVDVSGPDGSFVQGSRRDGFGGGAGAGGGRGGRGGGGGYGGGYGSGGGGGYGSGGGGGYGFNGGGRGGGGRGGRGGGGRNGGGYGSGGGGGGGGGSCYNCGEPGHLARDCYQGSGGGGGGGGGRFGGSGGGGGGGCYNCGEEGHFARECPSSNSMK* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00067 222 Gene3D - 198 222 - -
Eupl13g00067 222 Gene3D - 158 184 - -
Eupl13g00067 222 ProSiteProfiles Zinc finger CCHC-type profile. 163 176 IPR001878 GO:0003676|GO:0008270
Eupl13g00067 222 SMART csp_8 8 73 IPR011129 GO:0003676
Eupl13g00067 222 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Eupl13g00067 222 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Eupl13g00067 222 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Eupl13g00067 222 FunFam Cold shock protein 1 1 71 - -
Eupl13g00067 222 SMART c2hcfinal6 162 178 IPR001878 GO:0003676|GO:0008270
Eupl13g00067 222 SMART c2hcfinal6 201 217 IPR001878 GO:0003676|GO:0008270
Eupl13g00067 222 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Eupl13g00067 222 MobiDBLite consensus disorder prediction 64 98 - -
Eupl13g00067 222 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Eupl13g00067 222 SUPERFAMILY Nucleic acid-binding proteins 4 75 IPR012340 -
Eupl13g00067 222 CDD CSP_CDS 8 72 IPR002059 GO:0003676
Eupl13g00067 222 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Eupl13g00067 222 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 218 - -
Eupl13g00067 222 Gene3D - 2 85 IPR012340 -
Eupl13g00067 222 Pfam Zinc knuckle 162 176 IPR001878 GO:0003676|GO:0008270
Eupl13g00067 222 Pfam Zinc knuckle 201 217 IPR001878 GO:0003676|GO:0008270
Eupl13g00067 222 SUPERFAMILY Retrovirus zinc finger-like domains 155 218 IPR036875 GO:0003676|GO:0008270
Eupl13g00067 222 ProSiteProfiles Zinc finger CCHC-type profile. 202 217 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00067 Eupl-Chr13 970571 972099 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Eupl13g00067 CSD 1.2e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00067 - K09250 msin:131243512 148.673