Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00050 ATGAGAACCGAGAGAAGCCCTTCAGTAAGTTTTGAATCCCCATCAAGATGCTCTCGGCTGAGAATGCTCTCTAACAGATTTTGCAGTTTCATTGCTCACAGTAGCGAGAACCAGAACCAGAACCAGGCCCCGCGTCATCGAAGAAATCTTCATGGGGAGGTTGAAGAAGAGGAATTCCAGTATGCAACTGCAAGTACACATTGTCTCTCATCCTACTATACTGTCTTTGTCGCCCGCCTCGCCATCATGGTCATGCTAGCTATTTTAATTGGGTTGCTAACCATACTGACATGGCATGTTACAAGAGTCTACACAATAAAATCAATAAACAGCTTAGCATATGGCCTCCGTTTCGAACTTCTGCAGCGTCCCATATGGCGAATGTGGAACATCTTGAATTCCACCCAAGAAATAACTATGGCTCAGGTTAAATTGTCGGAATCTGTGATCAGATTGTATGATAAGCCGACGAGCCAAGCACAGCAAGTCGAGATTTATGAAGTTATGAGGGATATAACATGGGCCCTCTTTGCAAGTCGAAAGGTTCTCAATGCAATAACTATAAGCTACAAGAACGGTTTTGTCCAGGCTTTTCACAGAGATCACAAGAGTAACAACACATTCTACATCCACTCCAATCTTGTAAACGCTTCAGTTAGTGGGAGCCACAAACTTGATGCACTATCATCCCATCAAGGCTGGAATGTACATGGTAACATCTCTGCAACTTGGTATCGTGAACCACTCAATCCTGTTACAGGCAAGAAGACAGGGAAACCAAGACCAATCCCACCAGAAGATCTAATCAATATTGCGGGTCCATCAGAAGTACCCGATGGTGCAGCGTCGTGGCATGTTGCGGTAAGCAAATTTACAGATTCGCCATTTCTATCAGCGGCATTACCAGTCTTGGACTCTTCCAATGGAAGAATAGTAGCAGTTGTGGGTGTTACTACAGCACTCTATAGTGTGGGTCAGCTGATGAGGGAACTGGTAGAATTCCACAGTGGGTACATGTACTTGACTTCTCAGGAGGGATACATACTTGCAACATCCACAAATGCCCCACTTTTGAGGAATTCAACTAGTGGGCCCAAGCTTATGATGGCTGTTGATTCAGAAAATCATGTAATAAGATTGGGAGCCAAGTGGTTGCAGAGGGCCTATGGTGATAAGTTTTCTCCGAATCACGAGGTTCACGCTGAGAATGTCAAACTTGGAGGCCAGCAATATTACATTGATTCCTTCTTCCTAAATCTAAAGAGACTTCCTCTGGTGGGGGTTATCATCATTCCGAGAAAATATATAATGGGGAAGGAAGACCGGAGAGCCTATACGACGTTGGTAATACTGATATCGGCATCCTTATGTATTCTAGTCATTGGCTGTATTTGCATTTTCTTATTGACAAGGGGAGTTTCAAAGGAAATGAAACTGAGAGCTGAACTAATAAGCCATCTTGATGCAAGAAGACGGGCAGAGGCATCTAGCAACTACAAAAGCCGGTTCTTAGCAAACATTAGTCACGAGTTGCGAACACCTATGGCTGCAGTAATAGGGTTGCTGGACATTCTTATATGTGGCGATTGTCTGACAAATGAGCAATATGCTACAGTTACTCAGATTCGTAAATGCTCAACTGCTTTACTTCGGCTTCTCAATAACATTTTGGACCTCAGTAAGGTTGAATCTGGAAAACTAGTGCTAGAAGAAGCTGAATTTGACTTGGGGAGAGAACTGGAAGGAGTGGTGGATATGTTTTCCGTGCAACGCATTAACCACAATGTGGAGGTTGTTCTGGATCTCTCTGATGATATGCCAAAGTTAGTTCAGGGGGACTCGGCCAGAGTAGTTCAAATATTTGCAAATCTCATTAGCAATTCTATCAAATTTACATCATCCGGACATATTCTTTTGCGGGGATGGTGTGAGAGCTCTGATACTTCTTGTAATACGGAGAAGTTGCCACTTGATCAGAAGGAATCACGATTCGCACTCAAAACAAAATCAAAGCAACATGGAAACCATGCAAAGGGAATATTCGAGAAAGATAACAGAATTATTCTTTTGTTTGAAGTTGACGACACTGGCTGTGGAATTGATCCAAGCAAATGGGAGTTTGTATTTGAAAGTTTTGAGCAAGCTGATCCCTCAACAACCCGAACGCATGGTGGGACTGGTCTTGGCCTATGCATCGTGCGCACCTTGGTTGACAAGATGGGTGGAGAAATTAAAGTTGTGAAGAAGGATGGACCAGGGACTCTGATGCAACTATACTTGGTACTTAGTACACCTGTAGATGGCACTGAGCAGAATGGTCAAATAGAATTCGCAAAACATAGTTTAATGGTGTTGCTTGCACTTAAAGGCAGTATGGGTAGATCTATCATGTCCCAGTGGTTAAGGAAAAATGGGGTTTGCACCTTGGAAGCATCAGAGTGGAATGAACTAACCCAAAATCTTTGGGAAGTCTTTCAAGTCAGCGGTAGAATCCCCAACAGAGGCTTTGACACACAGTGTTCAACAAGTGAAACATTGGGACCCAAAGAGTTAAACATCCAAAACATGGGGACTTCAAAATATGTCATTGTAGTTGATATAGGACTACTCGACCTAAGCACAGATATATGGAAAGAGCAGCTTAAGTTCCTTGACATATATAATGGGAAGGCAAAATTTGCATGGATACTAAACCATGACACCTGCAATGCCGTTAAGATGGAACTTCGGAGGAAAGGGCATTTATTGATGGTTAATAAACCGCTATACAAAGCAAAAATGATTCAGATCTTGGAAGCTGTCATTAAAGAAATGAATTCTGAACTTCAGAGAAAAGGTTTTAACACTTCAAGAACTTCAACAATGCAAGGTGATTTGCATGAATCTCTTGAAATCGATCCCTTTCATTATGATGTTGCCAGCTCGGATGATTCTGATATGTCTGATGTGGGGAGTTTTAATTCAAGAAGCGGTGTGTTTCATGTTGGAGAAAAACCAGGAGATAGAATTACAACACTTTGTCCCCCACACTACAATGGGGTTGGAAACAGCTTAGCTGAGCACAACCAGGTTAGTTCCAAAGAAAAAAATTGGAAGCCTGAATATCCATGTCAGATGAGGCCCACTTTGTATAATATTGAAGACTCAACAGTCGAGTTATCTTACGGCAGAGATGTATCAGTATTAACAGAACTTGAATGTGGGAGTTTGGTACCCAGTGAACATCAAATGATCAGCAATGATTTCAAACAAAAAGATTGTGTAGCTTTAAGTAAGATTGTTCCCAAGCAGAAATCTCTTGAAGGCTTGTGTATACTCCTAGCAGAAGACACGCCTGTCCTACAGACGGTCGCAACAATAATGCTGGAAAGAATGGGGGCCACAGTCGTTGCCGTAGGAGATGGACTGCAAGCAGTAGATGCTCTGAAATGCATGTTTAGCAGAGAGGAGTGTAGAACATTGGAATCACCCTTGCAAGATGGCAAAGCCAGATATCAAACACAATTCCAGGAATTTCAGCAGTTTGATCTGATCCTCATGGATTGTCAAATGCCAAAGATGGATGGTTATGAAGCAACGAAAGCAATCAGGAAATCTGAGACAAGGACTGGTACACATATACCCATTGTTGCACTGACGGCCCATGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTGGGGATGGATGCTTATCTAACAAAGCCAATTGACTGCAAGCTGATGATGTCCACCATTCTTTCTCTAACTAAGAGAATGGCTTAG 3765 0.4255 MRTERSPSVSFESPSRCSRLRMLSNRFCSFIAHSSENQNQNQAPRHRRNLHGEVEEEEFQYATASTHCLSSYYTVFVARLAIMVMLAILIGLLTILTWHVTRVYTIKSINSLAYGLRFELLQRPIWRMWNILNSTQEITMAQVKLSESVIRLYDKPTSQAQQVEIYEVMRDITWALFASRKVLNAITISYKNGFVQAFHRDHKSNNTFYIHSNLVNASVSGSHKLDALSSHQGWNVHGNISATWYREPLNPVTGKKTGKPRPIPPEDLINIAGPSEVPDGAASWHVAVSKFTDSPFLSAALPVLDSSNGRIVAVVGVTTALYSVGQLMRELVEFHSGYMYLTSQEGYILATSTNAPLLRNSTSGPKLMMAVDSENHVIRLGAKWLQRAYGDKFSPNHEVHAENVKLGGQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGKEDRRAYTTLVILISASLCILVIGCICIFLLTRGVSKEMKLRAELISHLDARRRAEASSNYKSRFLANISHELRTPMAAVIGLLDILICGDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEEAEFDLGRELEGVVDMFSVQRINHNVEVVLDLSDDMPKLVQGDSARVVQIFANLISNSIKFTSSGHILLRGWCESSDTSCNTEKLPLDQKESRFALKTKSKQHGNHAKGIFEKDNRIILLFEVDDTGCGIDPSKWEFVFESFEQADPSTTRTHGGTGLGLCIVRTLVDKMGGEIKVVKKDGPGTLMQLYLVLSTPVDGTEQNGQIEFAKHSLMVLLALKGSMGRSIMSQWLRKNGVCTLEASEWNELTQNLWEVFQVSGRIPNRGFDTQCSTSETLGPKELNIQNMGTSKYVIVVDIGLLDLSTDIWKEQLKFLDIYNGKAKFAWILNHDTCNAVKMELRRKGHLLMVNKPLYKAKMIQILEAVIKEMNSELQRKGFNTSRTSTMQGDLHESLEIDPFHYDVASSDDSDMSDVGSFNSRSGVFHVGEKPGDRITTLCPPHYNGVGNSLAEHNQVSSKEKNWKPEYPCQMRPTLYNIEDSTVELSYGRDVSVLTELECGSLVPSEHQMISNDFKQKDCVALSKIVPKQKSLEGLCILLAEDTPVLQTVATIMLERMGATVVAVGDGLQAVDALKCMFSREECRTLESPLQDGKARYQTQFQEFQQFDLILMDCQMPKMDGYEATKAIRKSETRTGTHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDCKLMMSTILSLTKRMA* 1255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00050 1254 SMART REC_2 1103 1246 IPR001789 GO:0000160
Eupl13g00050 1254 SMART HKATPase_4 612 764 IPR003594 -
Eupl13g00050 1254 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 612 762 IPR003594 -
Eupl13g00050 1254 Gene3D - 1085 1252 - -
Eupl13g00050 1254 Pfam Response regulator receiver domain 1106 1245 IPR001789 GO:0000160
Eupl13g00050 1254 FunFam Histidine kinase 1-like protein 487 566 - -
Eupl13g00050 1254 Gene3D - 567 765 IPR036890 -
Eupl13g00050 1254 Gene3D - 487 566 - -
Eupl13g00050 1254 Pfam His Kinase A (phospho-acceptor) domain 500 565 IPR003661 GO:0000155|GO:0007165
Eupl13g00050 1254 ProSiteProfiles Response regulatory domain profile. 1104 1250 IPR001789 GO:0000160
Eupl13g00050 1254 Gene3D PAS domain 297 441 - -
Eupl13g00050 1254 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 487 566 IPR036097 GO:0000155|GO:0007165
Eupl13g00050 1254 CDD HisKA 500 561 IPR003661 GO:0000155|GO:0007165
Eupl13g00050 1254 SMART HisKA_10 499 565 IPR003661 GO:0000155|GO:0007165
Eupl13g00050 1254 CDD REC_hyHK_CKI1_RcsC-like 1105 1238 - -
Eupl13g00050 1254 PRINTS Bacterial sensor protein C-terminal signature 724 742 IPR004358 GO:0016310|GO:0016772
Eupl13g00050 1254 PRINTS Bacterial sensor protein C-terminal signature 707 717 IPR004358 GO:0016310|GO:0016772
Eupl13g00050 1254 PRINTS Bacterial sensor protein C-terminal signature 689 703 IPR004358 GO:0016310|GO:0016772
Eupl13g00050 1254 ProSiteProfiles Histidine kinase domain profile. 506 764 IPR005467 -
Eupl13g00050 1254 PANTHER TWO-COMPONENT HISTIDINE KINASE 62 769 - -
Eupl13g00050 1254 SUPERFAMILY CheY-like 1102 1251 IPR011006 -
Eupl13g00050 1254 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 554 760 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00050 Eupl-Chr13 741783 754081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00050 1 1254 Histidine Kinase Gene Family AT2G17820 60.427 0.0 1488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl13g00050 HATPase_c 2.7e-22 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00050 - - nnu:104604241 1743.4