Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00048 ATGGGTAGGTCTCCTTGTTGTGAAAAAGCTCACACTAACAAAGGAGCATGGACCAAAGAAGAAGATGATCGCCTCATCGCTCATATCAGAGCTCATGGTGAAGGGTGTTGGCGTTCCCTTCCCAAGGCTGCTGGTCTTCTCCGCTGTGGCAAAAGCTGTAGGCTTCGTTGGATCAACTACTTACGTCCAGACCTCAAACGTGGCAACTTCACCGACGAAGAAGATGAGCTTATCATCAAGCTTCATAGCCTACTTGGTAACAAGTGGTCTCTTATAGCGGGAAGATTACCAGGAAGAACTGATAACGAGATAAAGAATTATTGGAACACCCATATAAGGAGAAAACTATTGAACCGAGGGATTGACCCAACGACACACAGATCAATAAACGAGCCTGCTGTATCGGATGTCACCACGATCTCTTTCGCTGCTGTCAACAAAGAAGAAGAAGAAAGGAAGATTATTGTTGGGGGGTTTGGGTGCGAAGAAGAGAAGATTATCCGAGGCGAAGAACGGTGTCTTCTGGATTTGAATCTTGAGCTTCAAATTAGCCCTCCTTATCAACACCCATCTGATCAGCCATTGAAGAGTGGAGGGAGAGGGAGGAGAAGTCTTTGTTTCTCTTGCAGCTTGGGGTTGCAGAATAGTAAGGAGTGTAATTGTAGTAGTAGTAGCAGTAGTAGTAGCAGTGGTAGCAGTGATTTCTTAGGCATGAAGACTGGTATTTTGGATTACAGAAGCCTTGAGATGAAATAA 756 0.4497 MGRSPCCEKAHTNKGAWTKEEDDRLIAHIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPTTHRSINEPAVSDVTTISFAAVNKEEEERKIIVGGFGCEEEKIIRGEERCLLDLNLELQISPPYQHPSDQPLKSGGRGRRSLCFSCSLGLQNSKECNCSSSSSSSSSGSSDFLGMKTGILDYRSLEMK* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00048 251 FunFam Myb transcription factor 68 137 - -
Eupl13g00048 251 CDD SANT 69 112 IPR001005 -
Eupl13g00048 251 CDD SANT 16 61 IPR001005 -
Eupl13g00048 251 FunFam MYB-related transcription factor 13 66 - -
Eupl13g00048 251 Gene3D - 69 133 - -
Eupl13g00048 251 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 210 - -
Eupl13g00048 251 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Eupl13g00048 251 Coils Coil 251 251 - -
Eupl13g00048 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl13g00048 251 Gene3D - 14 66 - -
Eupl13g00048 251 SMART sant 13 63 IPR001005 -
Eupl13g00048 251 SMART sant 66 114 IPR001005 -
Eupl13g00048 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Eupl13g00048 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Eupl13g00048 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl13g00048 251 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Eupl13g00048 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00048 Eupl-Chr13 720597 722002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00048 1 251 MYB Transcription Factor Family AT4G38620 59.649 7.55e-107 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl13g00048 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00048 K09422 - csin:114311392 396.741