Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl13g00019 ATGCGGGTTCTTGTCTTCAATGATGATCCACTTATCTATTGCTTTCAACTCAGTTTCTGTACTTGTTCACTTTTGTTTATATTCCTCTTCTCATGTTTTTGTTCCTTCATATGGAACATAAACAGAAGTAGTAGTCACAGACATATAAACATGACTGTTGTACAAAGCTTCATGGAGAGGCTGAGACCTCTTGTGGGTTCCAAAAGCTGGAATTACTGTGTTCTTTGGAAACTGGGCGAAGATCAAAGGTTTATTGAGTGGGTGTGTTGCTGTTGTGGTGGAGCTGAGAACACCCAAAATGGTGGAGAAGAGCATCTGTTTCTAGTCTCTCCAGTGCTTCCTTGCAGGGATTTGATGTTTCAGCACCCAAGGACTAAACATTGCGATCTTCTCGACCAGTTGCCTTCTTCCATGCCCTTGGATTCCGGGATTCATGCGCAGACCTTAATATCAAACCAACCCAGATGGATAAACCTCCCCAATTGCTCGGATTCAAGTGTTTCTGATGAAACGGTAGGGACAAGGGTTTTGATTCCTGTGCCCGGAGGACTAATTGAGTTGTTTGTCACAAAACATGTACCTGAAGATCCACAAATCATAGAATTCGTTATGGCCCATAGCAACGTCTCATGGGAGCAAGAAGCCATGAACATAAGGAGCAGTACCGACACAGGTTTCCATGACCATCCATCCATGCTTACACGAGAGCTCGATCATTTCCAGCCATGGGTATCCCCATCCACAACCACCGATAATTTGAATTCTCCATGGGATCTTTCTGTTGATCAAATTCGTCTTTGCGGCTCTCCGATGAACTTTTTCGGTGGTGGGTACGGCCAACAATTTCCTCCTTCCTCGGAAAATCGACCTAAGAATGATATATTCTTAGAAGGGTCCACAGCAGAGTCAATTATGTCTGATAAACAAATGGCGGCTTTTAATTCTTCGTTGGAGCATGGATTTCCAGAGGTTGCACTGCCGCAGCACTCTTTGATGAGCACTAGTGCTGCTGACTTGCATCAGTCCATGGAGTCTTCGGTGACTAAGGAGCAGCCCGGACACGACAAGGATTCGGTAAAACAGGAGACCGCCGGTCGAGCAGATTCGGTCTCAGATTGTAGCGATCAGATTGAGGATGATGATGATCAGAGAGTAGTAGGGAGAGGTGGGAAACGACACCAATCGAAGAACCTTGTCGCTGAGAGGAAGAGAAGGAAAAAGCTCAATGATAGGCTCTATGCTCTACGAGCTCTAGTTCCCAAGATCACTAAGATGGATAGAGCGTCAATCCTTGGAGATGCAATCGAATTCGTGAAAGAGTTGCAGAAGCAAGTGAAGAATCTCCATGACGAGCTCGAGGAGCCGCCAGAGGAAGACGGTGATAACAACAACTGCAACAACGTCCAATTAGAAATTCCGAATCAAAATGGGGTTAGTACTCATGAATCCAAACCCAAACATGATGAATCTCTCATTGGATCAACAATGGGAATGACTGATCCCTCTAAACAATCTCACGATGCGGTAAATGTTGATGACAAGACACCACAGATGGAGGTGCAAGTAGAAGTGACCCAAATAAATGGAAATGAATTCTTCCTCAAGGTATTCTGCGAGCACAAGCCGGGTGGGTTTGTGAGGTTGATGGAGGCCATGAATTCTCTAGGCCTAGAAGTCACCAACGCAAATGTCACAACCTTCAGAACCCTGGTTTTGAATATCTTCAAAGTGGAGAAGAGAGATAATGAAATGGTTCAAGCAGACCATGTTAGGGATTCGTTGCTTGAGCTAACACGCAACCCGATCGGAGGATGGTTGGAACCCATTGGCGCATCAGAGACTGGCAGTGCTGTGGATTATCAACATCACCACCACCACCATCTTAATTCCCACCACCACCACCATCTCAATTCCCACCCTCTCAACCTCCAAGCATAA 1938 0.4556 MRVLVFNDDPLIYCFQLSFCTCSLLFIFLFSCFCSFIWNINRSSSHRHINMTVVQSFMERLRPLVGSKSWNYCVLWKLGEDQRFIEWVCCCCGGAENTQNGGEEHLFLVSPVLPCRDLMFQHPRTKHCDLLDQLPSSMPLDSGIHAQTLISNQPRWINLPNCSDSSVSDETVGTRVLIPVPGGLIELFVTKHVPEDPQIIEFVMAHSNVSWEQEAMNIRSSTDTGFHDHPSMLTRELDHFQPWVSPSTTTDNLNSPWDLSVDQIRLCGSPMNFFGGGYGQQFPPSSENRPKNDIFLEGSTAESIMSDKQMAAFNSSLEHGFPEVALPQHSLMSTSAADLHQSMESSVTKEQPGHDKDSVKQETAGRADSVSDCSDQIEDDDDQRVVGRGGKRHQSKNLVAERKRRKKLNDRLYALRALVPKITKMDRASILGDAIEFVKELQKQVKNLHDELEEPPEEDGDNNNCNNVQLEIPNQNGVSTHESKPKHDESLIGSTMGMTDPSKQSHDAVNVDDKTPQMEVQVEVTQINGNEFFLKVFCEHKPGGFVRLMEAMNSLGLEVTNANVTTFRTLVLNIFKVEKRDNEMVQADHVRDSLLELTRNPIGGWLEPIGASETGSAVDYQHHHHHHLNSHHHHHLNSHPLNLQA* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl13g00019 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Eupl13g00019 645 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 59 204 IPR025610 -
Eupl13g00019 645 CDD ACT_UUR-ACR-like 534 597 - -
Eupl13g00019 645 MobiDBLite consensus disorder prediction 335 398 - -
Eupl13g00019 645 MobiDBLite consensus disorder prediction 624 638 - -
Eupl13g00019 645 MobiDBLite consensus disorder prediction 622 645 - -
Eupl13g00019 645 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 252 598 - -
Eupl13g00019 645 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 394 457 IPR036638 GO:0046983
Eupl13g00019 645 Gene3D - 381 457 IPR036638 GO:0046983
Eupl13g00019 645 SMART finulus 398 447 IPR011598 GO:0046983
Eupl13g00019 645 MobiDBLite consensus disorder prediction 349 363 - -
Eupl13g00019 645 CDD bHLH_AtAMS_like 395 449 - -
Eupl13g00019 645 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 392 441 IPR011598 GO:0046983
Eupl13g00019 645 Pfam Helix-loop-helix DNA-binding domain 399 442 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl13g00019 Eupl-Chr13 408599 411951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl13g00019 54 634 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 46.358 2.88e-150 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl13g00019 bHLH-MYC_N 1.2e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl13g00019 - - msin:131229114 658.677