Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl13g00012 | ATGGACTTCGATGAGTATGATTATTTAGAAAAAACAGTTGAAAATCCAGAAGCGCCTAAAGAGAAGGAAACAGCAAACGGTGGTGACGCTGTTAAATCAGGGGAAAAAAATCGGAAGAGTTCCAAGCATAGGAGTGATGATAACGAGGACAATTTGGATATCCGCTCGAAGCGTTCGAGATCTGGAGACGAGACTCGGGACCACGACCGACATAGAGAGAGGGCCTCCTCGCATCACCGCTCCTCTCCCGACCACCGGTCGAGAGATGGGGAGCGGAGTGAGAGAGACCGGCACAGAAGCAGTAGAGAAAACAGAGATAGAGACAAGGATAGGGATAGGGTCAGGGAGGAAAGGAACGGGAAGGAGAGAGACCGCGACAAAGATAGAGAGCGGGACAGGGACCAGGATAGGATAAGAGAGCGTGATCGTGAAAGTGAAAGGGAAAGGGAGAGGGAACTGGAGCGATCACGCCGGAGCAGGAGCCGCTCCGAAAAGCACCGCAGTGACCGCAATAAGGATGCTGAACCTCAGAGGGACAGAGAGAGGAGCAGAGACACGGAGTTCAGAGAAAAGGAGAGGGAATTAAGAGACAGAGATCGGGATGGCAGACGCTACAAAGAGAAAAAGGAAGAAGTGGCAGAGCCAGAAGCTGATCCAGAACGAGATCAAAGGACCGTATTTGCTTATCAGATTTGTTTGAAGGCAGACGAAAGAGATGTGTATGAATTTTTTTCAAGGGCGGGCAAGGTGCGAGATGTGCGCCTCATAATGGACCGCAATTCGAGACGTTCTAAGGGAGTTGGGTATATTGAGTTTTATGATGTAATGTCAGTCCCCATGGCTATAGCACTCTCTGGTCAGCCACTTCTTGGTCAACCAGTGATGGTTAAACCATCAGAGGCTGAAAAGAATCTGGTTCAATCAAATACAGCTGTAGTTGGAGGAGTAGGTGGTATGATTGGACCCTATTCAGGGGGAGCTAGAAGGTTGTATGTTGGCAATCTGCACTTCAACATCACAGAAGATCAACTTCGTCAGGTGTTTGAACCATTTGGTCCTGTGGAGTTGGTGCAGTTGCCTCTTGACCCAGAGACTGGGCAATGCAAAGGTTTTGGTTTTGTCCAATTTGCACGTCTTGAAGATGCTAGAGCTGCTCAGAGTTTAAATGGACAATTAGACATTGCTGGGAGGATAATCAAGGTTTCAGCTGTTTCTGATCAGATTGGAATGCAAGATGTTGGGGCAAATGCCGGTGATTTTGATGATGATGATGGCGGAGGCTTGTCTTTGAACGCTCGTTCTAGAGCCATTCTCATGCAGAAGTTGGACCGTAGTGGCACTGCTTCTAGCATTGCTGGTTCACTTGGCACTCCTGTTGGCAATGGACCCAGCCTTACTCTTCCAGCTGCACCAGTTCTTGGTGGTGCACCTGTGGTTGCTCCCCTCGGACAGGCTTCCGTGCCTGCACTTGCAGGGTTGCCAGGTCTTCCAGTTCCTGCTGTTACTGTACCTCCTGTCGATATCATTGGCGTCCCTAGTGAATGTTTATTGCTGAAGAATATGTTTGATCCAATGTTGGAGACGGAACCAGATTTTGATTTCGATATTAAAGATGATGTTCAAGATGAATGTTCGAAGTTTGGCGCTGTGAAACATATCTTTGTGGACAAGAATAGTGCTGGGCATGTATACTTGCGGTTTGAAAACACACAATCTGCCATGAATGCACAACGTGCACTCCACGGGAGGTGGTTTGCTGGGAAGATGATCACGGCAACATTCATGCTGCCACAGAATTACGAGGCGAAGTTCCCTGACGGAAAATAA | 1827 | 0.4833 | MDFDEYDYLEKTVENPEAPKEKETANGGDAVKSGEKNRKSSKHRSDDNEDNLDIRSKRSRSGDETRDHDRHRERASSHHRSSPDHRSRDGERSERDRHRSSRENRDRDKDRDRVREERNGKERDRDKDRERDRDQDRIRERDRESERERERELERSRRSRSRSEKHRSDRNKDAEPQRDRERSRDTEFREKERELRDRDRDGRRYKEKKEEVAEPEADPERDQRTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSNTAVVGGVGGMIGPYSGGARRLYVGNLHFNITEDQLRQVFEPFGPVELVQLPLDPETGQCKGFGFVQFARLEDARAAQSLNGQLDIAGRIIKVSAVSDQIGMQDVGANAGDFDDDDGGGLSLNARSRAILMQKLDRSGTASSIAGSLGTPVGNGPSLTLPAAPVLGGAPVVAPLGQASVPALAGLPGLPVPAVTVPPVDIIGVPSECLLLKNMFDPMLETEPDFDFDIKDDVQDECSKFGAVKHIFVDKNSAGHVYLRFENTQSAMNAQRALHGRWFAGKMITATFMLPQNYEAKFPDGK* | 609 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl13g00012 | 608 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 538 | 590 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 330 | 397 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 235 | 293 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 328 | 406 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 224 | 301 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | MobiDBLite | consensus disorder prediction | 1 | 221 | - | - | |
| Eupl13g00012 | 608 | Gene3D | - | 324 | 412 | IPR012677 | - | |
| Eupl13g00012 | 608 | CDD | RRM1_RBM39_like | 225 | 297 | - | - | |
| Eupl13g00012 | 608 | SUPERFAMILY | RNA-binding domain, RBD | 328 | 600 | IPR035979 | GO:0003676 | |
| Eupl13g00012 | 608 | FunFam | RNA-binding protein 39 isoform X1 | 217 | 309 | - | - | |
| Eupl13g00012 | 608 | FunFam | CC1-like, splicing factor | 323 | 432 | - | - | |
| Eupl13g00012 | 608 | Gene3D | - | 217 | 310 | IPR012677 | - | |
| Eupl13g00012 | 608 | MobiDBLite | consensus disorder prediction | 1 | 159 | - | - | |
| Eupl13g00012 | 608 | Gene3D | - | 509 | 608 | IPR012677 | - | |
| Eupl13g00012 | 608 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 606 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Eupl13g00012 | 608 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 420 | 532 | IPR029123 | - | |
| Eupl13g00012 | 608 | SMART | rrm1_1 | 329 | 402 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | SMART | rrm1_1 | 225 | 297 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | SMART | rrm1_1 | 515 | 593 | IPR000504 | GO:0003723 | |
| Eupl13g00012 | 608 | SUPERFAMILY | RNA-binding domain, RBD | 218 | 326 | IPR035979 | GO:0003676 | |
| Eupl13g00012 | 608 | CDD | RRM2_RBM23_RBM39 | 330 | 407 | - | - | |
| Eupl13g00012 | 608 | CDD | RRM3_RBM39_like | 513 | 595 | - | - | |
| Eupl13g00012 | 608 | MobiDBLite | consensus disorder prediction | 166 | 221 | - | - | |
| Eupl13g00012 | 608 | FunFam | Splicing factor, CC1-like protein | 509 | 608 | - | - | |
| Eupl13g00012 | 608 | NCBIfam | splicing factor, CC1-like family | 105 | 605 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl13g00012 | Eupl-Chr13 | 341754 | 374013 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl13g00012 | 326 | 401 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 40.260 | 8.97e-07 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl13g00012 | K13091 | - | nnu:104603657 | 791.186 |