Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01413 ATGGCTTCCATTATAGGCGTCTCGTCCCTTTACCAGACGCTGTCTCTAGAGCTTTCTAGAAGGGTCTCGTCTTCTATTCCTCTACCTTCTTCCGAGAAGACCCAGTTCGGAAGCATAAAGGCCTCCAACAAGGGCTTCGAAGCTGCTTCCTGTTCTCTGAGAAGTTGGAGGGATTCAAGGACGAGTAGTCCCCTGTTCATCCCTTCTGCGATTGCGACTCCAAATTCAGTGTTGAGTGAAGAGGCTTTCAAAGGTCTCGGCGATTTCACAAAGGGGTCTCTGAAAGTTGAAGACCAGTACGGCTCAGAAACCGAAGGAGGAGGGGAAGATGACCTTGCCATCGCCAATTTGGGTTTACCGCAGCAGCTCGTGGAATCGCTCGAGAAACGAGGGATTACACACCTTTTCCCCATTCAAAGAGCCGTGCTACTTCCTGCCTTGGAAGGTCGAGATATCATTGGTCGTGCAAAGACTGGGACAGGGAAGACTTTGGCCTTTGGAATTCCAGTTATTAAACGCCTTACTGCCGATGATGAAGGACGAAGTATTTCAAGGCGTTCAGGCCGTCTTCCCAGATTTCTGGTCCTTGCACCGACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAAATCAAGGAGTCGGCACCTTATTTGAGCACTGTCTGTGTTTATGGAGGAGTATCTTATAATATCCAGCAAAATGCACTCTCCCGTGGAGTTGATGTGGTGGTGGGAACTCCAGGGCGTATCATCGATCTGGTTAACAGTAACAGCCTCAAGTTGGGTGAAGTTCAATATTTGGTCCTCGACGAAGCTGATCAGATGCTTGCTGTTGGATTTGAGGAAGATGTGGAAGTAATATTGGAAAAGCTTCCATCTGAGCGACAGAGCATGCTTTTCTCTGCAACAATGCCTGCTTGGGTGAAGAAGTTGGCGAGGAAATACTTGGATAATCCTTTGACAATCGATTTGGTTGGTGATCAAGATGAAAAGCTGGCAGAAGGGATCAAGCTGTATGCAATACCAACAACTGCAAGTTCAAAGAGAACCATTCTCAGTGACCTTATCACGGTCTATGCAAAGGGTGGGAAGACCATTGTTTTCACACAGACAAAACGGGATGCTGATGAAGTGTCAATGGCTTTAACTACCAGTATTGCTTCAGAGGCACTGCATGGTGATATATCTCAACATCAACGGGAGAGAACATTGAATGGGTTTCGGCAAGGGAAATTCACTGTGCTCGTTGCCACAGATGTTGCAGCTCGTGGACTTGATATCCCCAATGTTGATTTGGTTATTCACTATGAACTGCCCAACGATCCAGAGACTTTTGTGCATCGCTCTGGTCGCACAGGGCGTGCAGGGAAAGAGGGTAGGGCCATTTTGATGTTCACTAGTAGCCAGAGAAGAACTGTTAGATCTCTTGAGCGTGATGTGGGATGCCATTTTGAGTTTATTAGCCCACCACAAATTGAAGATGTTTTGGAATCTTCGGCTGAGCAAGTTGTTGCTACTCTCAATGGGGTTCATCCGGAATCTATAGAATTCTTCATTCCAACTGCACAAAAAATGATTGAAGAGCAAGGAACAGGTGCTCTTGCAGCTGCGCTGGCATACTTGAGTGGTTTTTCCCAACCCCCTTCATCTCGTTCTCTTATTAGCCATGAGCAGGGATGGGTAACATTGCAATTAACTCGCGATCCAGGTTATTCTAAAGGGTTCCTGTCTGCCAGATCTGTCACTGGTTTCCTATCTGACGTTTATCCTGCTGCTGCTGATGAAGTTGGAAAAATATATTTAATTGCAGATGAAAGGGTTCAAGGAGCTGTTTTTGATTTGCCAGAGGAGATTGCCAAAGAGCTACTGAATAAGCAGACACCCCCTGGAAACTCGATATCCAAGATCACCAAGTTACCTGCGTTGCAAGATGATGGCCCTCCGAGTGACAACTACGGCAGGTTTTCTAACAGGGAACGGGGTTTCCGAGGAGGTTCTCGGGAACGAGGAGGCTTCAGAGGTTCCCGAGGTTGGGGTGGTGGCCGAGGTTCTGATGATGAAGATGGATTCCGGCGTGGTGGCCGGAGCTACAAAACTGACAACAGTTGGTCTCAGAACTCAAGAAGCAGTGGGGATGATTGGCTAATTGGTGGTAGACGAACAAACAGGTCATCATCCTTCAGGAGTAGGGAAAGTGGCTTTGGAGGCTCATGTTTCAATTGTGGACGATCTGGGCACAAAGCATCAGAATGCCCTAACAAGCAAGACTACTAG 2271 0.4738 MASIIGVSSLYQTLSLELSRRVSSSIPLPSSEKTQFGSIKASNKGFEAASCSLRSWRDSRTSSPLFIPSAIATPNSVLSEEAFKGLGDFTKGSLKVEDQYGSETEGGGEDDLAIANLGLPQQLVESLEKRGITHLFPIQRAVLLPALEGRDIIGRAKTGTGKTLAFGIPVIKRLTADDEGRSISRRSGRLPRFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYNIQQNALSRGVDVVVGTPGRIIDLVNSNSLKLGEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPAWVKKLARKYLDNPLTIDLVGDQDEKLAEGIKLYAIPTTASSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSMALTTSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGRAILMFTSSQRRTVRSLERDVGCHFEFISPPQIEDVLESSAEQVVATLNGVHPESIEFFIPTAQKMIEEQGTGALAAALAYLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYSKGFLSARSVTGFLSDVYPAAADEVGKIYLIADERVQGAVFDLPEEIAKELLNKQTPPGNSISKITKLPALQDDGPPSDNYGRFSNRERGFRGGSRERGGFRGSRGWGGGRGSDDEDGFRRGGRSYKTDNSWSQNSRSSGDDWLIGGRRTNRSSSFRSRESGFGGSCFNCGRSGHKASECPNKQDY* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01413 756 MobiDBLite consensus disorder prediction 679 694 - -
Eupl12g01413 756 SUPERFAMILY Retrovirus zinc finger-like domains 720 755 IPR036875 GO:0003676|GO:0008270
Eupl12g01413 756 MobiDBLite consensus disorder prediction 624 756 - -
Eupl12g01413 756 CDD DEADc 123 322 - -
Eupl12g01413 756 Pfam Zinc knuckle 736 752 IPR001878 GO:0003676|GO:0008270
Eupl12g01413 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 476 IPR027417 -
Eupl12g01413 756 Gene3D - 339 530 IPR027417 -
Eupl12g01413 756 CDD GUCT_Hera 549 629 - -
Eupl12g01413 756 Gene3D - 700 755 - -
Eupl12g01413 756 SMART c2hcfinal6 736 752 IPR001878 GO:0003676|GO:0008270
Eupl12g01413 756 Pfam GUCT (NUC152) domain 542 642 IPR012562 GO:0003723|GO:0004386|GO:0005524
Eupl12g01413 756 FunFam Nucleolar RNA helicase II 343 533 - -
Eupl12g01413 756 Pfam DEAD/DEAH box helicase 136 310 IPR011545 GO:0003676|GO:0005524
Eupl12g01413 756 CDD SF2_C_DEAD 335 464 - -
Eupl12g01413 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 112 140 IPR014014 GO:0003724
Eupl12g01413 756 MobiDBLite consensus disorder prediction 718 732 - -
Eupl12g01413 756 Gene3D - 113 325 IPR027417 -
Eupl12g01413 756 ProSiteProfiles Zinc finger CCHC-type profile. 737 752 IPR001878 GO:0003676|GO:0008270
Eupl12g01413 756 MobiDBLite consensus disorder prediction 696 711 - -
Eupl12g01413 756 MobiDBLite consensus disorder prediction 655 669 - -
Eupl12g01413 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 495 IPR001650 -
Eupl12g01413 756 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 109 647 - -
Eupl12g01413 756 SMART ultradead3 131 338 IPR014001 -
Eupl12g01413 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 321 IPR014001 -
Eupl12g01413 756 Pfam Helicase conserved C-terminal domain 347 455 IPR001650 -
Eupl12g01413 756 FunFam ATP-dependent RNA helicase RhlE 103 324 - -
Eupl12g01413 756 SMART helicmild6 375 455 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01413 Eupl-Chr12 30667106 30682399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01413 138 495 Eukaryotic Initiation Factors Gene Family AT1G72730 37.466 1.07e-63 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01413 - - nnu:104588953 1151.73