Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01411 ATGGGAGCTATGCTGTGCTTGGTGGCTATTGGGAAGGAGCGTAACGCTGTGATTTATGATGACAAGATTGCCAATCATAGATGTGTTCTTATGTGGATTGTCAGCAATATTAGAGAAGCATTGAAGGGCTGTCCGCCTAGCACCAGGGCCGATGATACGATGATTAAAAATCTGGGCATTAATCCAATTCTCCGGCAATCACCATTAATTCTTCCTTGCAAATGGCTGTTACCACCTTCGGGTGTGATGAAGCTTAATTGTGATGGTGCATCACGAGAGATGGTTAGAGATGCAGATGCAGATGCCAGCCGTGAGTTGTTGTTTGGTAACAAAAGAACAAAAATTCACATTATGTCAGCTAAAACAGATCCCCGGCCCTCGAACTCACACTATAAAAACATCGCTCTTGGAATACTCAGGAGGTTCGAAGCGACTCGCGGTAGCGAAACAAGCAAATATATTATAATGGGCGGGCCAACCGAAAGTTTACAGGCAAAAAGAAAGGTGTCACCGAGGGGACATCGAAGATTCGTTGGAGTCCGGCAGAGACCATCGGGCAGATGGGTGGCCGAGATCAAGGACTCCTTGCAGAAGGTTAGGTTATGGCTTGGCACTTTTGATACTGCGGAGGATGCGGCTCGTGCCTATGACGATGCGGCTCGTGCCCTCCGAGGCGCCAATGCTCGTACCAACTTTGAATTGCCAACCGTGTCCGGTTCCAACCGTATTGACGGAGACATGACAGAGAATATGACGCCGTTCTCATTCGAGAACGGGTGCGAGACGGCAGGAGACGGGTTGCTTGGCGCACTCAAGGCAAAGTTGCTGGATGGGAAGACGGTACCGATCCGGCTATTTGGGAGTTGTGCAAGTGTAGTGAGGCCTAGTGTTGTGGTCGTCACATCCGACACTGAAAATATTAATGCAAAGGGTGATGAGCCGTTTAACAATATTCCTACAGTTGTGAACCCAAATCAAAGTTCTATACTAGTGGGGTCCAGTAAGGATGACGTGGTCAATTACATGATGCCAGGTCATGATCATGAAGTTGTAGTTCACGGTGGGAGTAATGAAAGGCTGCACCATTGCGGTAACCCTGCTCCTGCGTTGTCTACTAGCCAGATGACAAGTGTAGCGTGGTCCAACGAGGAGACTATAAATGATGCTGCATCGGCATCGTTGATACAAATCAACCCCGAAAATGGATTGTTAACATCTACCTTGCAAGTCTCCGGGCCAATTAATGCAGCAACGCTAGACATGTCATACTCGGGACAGCAGACGAGAAGGAAGGGAGGGGTAGAGATAGCAAATGCAGCGATGTTGCAAGAAAATGGGGGAATGGGAGGAAGTTGGTCATCTCAGGAGGAGTACTTAGTGCATTGTGAGAACAGCGGGTGGGGTGGTGGGAATGGGGCATGGGACCCCTTACTCTATGTATCCTCTGTGCTAAGGTAA 1458 0.487 MGAMLCLVAIGKERNAVIYDDKIANHRCVLMWIVSNIREALKGCPPSTRADDTMIKNLGINPILRQSPLILPCKWLLPPSGVMKLNCDGASREMVRDADADASRELLFGNKRTKIHIMSAKTDPRPSNSHYKNIALGILRRFEATRGSETSKYIIMGGPTESLQAKRKVSPRGHRRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDDAARALRGANARTNFELPTVSGSNRIDGDMTENMTPFSFENGCETAGDGLLGALKAKLLDGKTVPIRLFGSCASVVRPSVVVVTSDTENINAKGDEPFNNIPTVVNPNQSSILVGSSKDDVVNYMMPGHDHEVVVHGGSNERLHHCGNPAPALSTSQMTSVAWSNEETINDAASASLIQINPENGLLTSTLQVSGPINAATLDMSYSGQQTRRKGGVEIANAAMLQENGGMGGSWSSQEEYLVHCENSGWGGGNGAWDPLLYVSSVLR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01411 485 SUPERFAMILY DNA-binding domain 177 234 IPR016177 GO:0003677
Eupl12g01411 485 ProSiteProfiles AP2/ERF domain profile. 176 233 IPR001471 GO:0003700|GO:0006355
Eupl12g01411 485 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 152 256 - -
Eupl12g01411 485 CDD AP2 176 233 IPR001471 GO:0003700|GO:0006355
Eupl12g01411 485 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Eupl12g01411 485 PRINTS Ethylene responsive element binding protein signature 177 188 IPR001471 GO:0003700|GO:0006355
Eupl12g01411 485 PRINTS Ethylene responsive element binding protein signature 199 215 IPR001471 GO:0003700|GO:0006355
Eupl12g01411 485 SMART rav1_2 176 239 IPR001471 GO:0003700|GO:0006355
Eupl12g01411 485 Pfam AP2 domain 176 225 IPR001471 GO:0003700|GO:0006355
Eupl12g01411 485 FunFam ethylene-responsive transcription factor RAP2-11 175 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01411 Eupl-Chr12 30652822 30661428 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01411 164 232 AP2-EREBP Transcription Factor Family AT5G19790 67.143 7.56e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Eupl12g01411 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01411 - - tcc:18605918 226.483