Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01400 ATGGCTTCTCGTTTCTGGACACAGGGTGACAGTGACACAGAGGAGGAGGAGGAGGAAAATGATTTCGAAGATGGAGTTGATAACGGTGGTGGAGCCGGTGAGGCCCCTGGGGCTGCTGCTGGAAGCAGATACCTGCAGGGGAATGCGAGTGATAGTGATGACTCTGATGGTCAGAGACGTGTTGTCCGATCTGCCAAAGATAAACGCTTTGAGGAGATGTCAGCTACTGTTGATCAGATGAAAAACGCCATGAAGATCAATGACTGGGTCAGCCTTCAAGAGAGCTTTGACAAGATCAACAAGCAGCTCGAGAAGGTAATCCGGGTCACAGAATCTGAAAAGGCCCCGACCCTTTACATCAAAGCTCTTGTGATGTTGGAGGACTTCTTGAGTGAGGCTCTTGCCAATAAGGATGCCAAGAAGAAGATGAGTAGTAGCAATGCCAAGGCCTTGAATTCCATGAAGCAGAAACTTAAGAAGAATAATAAGCAATTTGAGGATCTGATCAATAAGTTCAGGGAGAATCCTGAAAGTGAGGATGAAGGGCAAGCGGATGAACAGACAGAAGAGGAGGATGATTCAGGTTCAGAGTTCGAGGAGGATCCATCAAATATTGCGGCTATGTCAGAGTCTGAAGATGGTGATGATGAAGATGAGGATGGGGATAACCAAGCTGAGGGTGGTGGGGGTTGGGAGAAGAAGATGAGCAAGAAAGATAAGCTCATGGACAAACAATTCATGAAGGACCCAAGCGAGATCACATGGGATACAATTGATAAGAAGCTCAAGGAGATCGTAGCTGCGAGGGGTCGGAAGGGAACTGGAAGGGTCGAGCAGGTTGAACAGCTTACTTTTTTGACGAAGGTTGCCAAGACCCCTGCCCAGAAACTTGAGATCCTCTTCAATGTCGTTTCCGCTCAGTTCGATGTGAACCCTAGTCTCAGCGGGCACATGCCCATAAATGTATGGAAGAAGTGTGTGCAGAACATGCTTGTCATACTTGACACCCTCGAGCAGTATCCGAACATTGTGGTGGATGACTTGGTGGAGCCTGAAGAGAATGAGACCCAGAAGGGAGCAGACCATAAGGGGACGATTCGAATTTGGGGGAACTTGGTCGCCTTCCTTGAGCGGATGGATGTTGAGTTATTTAAGAGCTTGCAATGCATCGATCCTCACACTCGTGAGTACGTGGAGAGGCTCAGGGATGAACCTATGTTCTTTGTTCTTGCCCAAAATGTTCAGAATTATTTAGAACGAATTGGGGATTTCAAGGCAGCTGCAAAGGTTGCACTGAGACGGGTTGAGCTTGTTTATTATAAGCCCCAAGAGGTTTATGATGCAATGAGGAAACTGGCTGAGCAGACAGAGGGTGGAGAGAATGGGGAAATGGAGACAGATGAGGAGCCTCAAGTGGTCAAGGAAAATAGGGGCCCGCCAGCTTTTGTTGTTACTCCTGAGCTTGTGCCACGAAGACCCACTTTTCCAGAGAACTGCAGGACATTGATGGATGTACTGGTTTCTCTTATTTACAAATACGGGGATGAACGGACTAAAGCTCGTGCAATGCTTTGTGATATCTATCACCATGCTATTATGGATGGGTTCTCAAATTCTCGAGATTTATTGCTAATGAGTCACTTGCAGGATGGGGTCCAGCACATGGACATTTCAACACAAATACTTTTTAACAGAGCTATGGCCCAACTTGGCTTATGTGCATTTAGAGTTGGACTCGTTACAGAAGCACACAGTTGCCTTTCTGAACTATATGCAGGTGGAAGAGTAAAGGAATTACTTGCACAAGGTGTCTCACAGAGTCGTTATCATGAGAAGACTCCAGAGCAGGAAAAGCTGGAACGGAGAAGGCAGATGCCATACCACATGCACATAAATCTTGAGCTCCTGGAAGCTGTCCATCTGATATGTGCCATGCTCCTGGAGGTCCCCAACATGGCAGCCAACACCCATGATGCCAAACGCAAAGTCATAAGCAAGACGTTCCGTAGGCTGCTTGAGGTGAGTGAGAGGCAGACCTTCACAGGTCCCCCTGAAAATGTCCGGGACCACGTCATGGCTGCCACTAGGGCTCTTAGCAAGGGAGACTTCCAGAAGGCCTTTGACATCATCAACTCCCTTGATGCCTGGAAGCTCCTCAGGAACCGTGAGAATGTTCTTGAGATGCTCAAGACCAAGATCAAGGAAGAGGCCGTGAGGACCTACCTGTTCACCTACTCCTCATGTTATGAATCCCTGAGCTTGGACCAGCTTACCACGATGTTTGACCTGTCAGAAGCCCACACACACAGCATTGTGAGCAAGATGATGATTGTGGAGGAGCTCCATGCAAGCTGGGACCAGCCTACCCGGTGCATAGTCTTTCACAACGTTGAGCACACGAGGTTGCAGGCTCTGGCATTCCAGTTGACAGAGAAGCTGTCGATCCTTGCAGAAAGCAACGAGAGGGCGTTTGAGGCAAGGACAGGCGGAGGGTTGGATGGGCTTCCCCCAAGGCGTAGAGATGGCCAGGACTATGCTGGGGCTGCAACGGGCAAGTGGCAAGAGAACTTCTCTCAGGGAAGGCAAGGCAATTATGGCGGGCGTTCAGGGTTTGGTGTTGGTGGGAGATTGCCCACTTTTGGTCAGGCATCTGGAGGAGGATTTTCTAGGGATAGAGCAGGGCAGTCGCGAGGAACTGGAGGATATTCAGCAGGGTACCAGAGCACTCGTTATCAAGATGCATATGGAGGGGTCGGGAGGACTCCCTATCAGACAGGTTCAATGGTGAGGGGATCCCAGATGGATGGTTCAGCTCGTATGGTTAGTCTCAACAGGGGGGGTCGCGTTTAG 2850 0.4933 MASRFWTQGDSDTEEEEEENDFEDGVDNGGGAGEAPGAAAGSRYLQGNASDSDDSDGQRRVVRSAKDKRFEEMSATVDQMKNAMKINDWVSLQESFDKINKQLEKVIRVTESEKAPTLYIKALVMLEDFLSEALANKDAKKKMSSSNAKALNSMKQKLKKNNKQFEDLINKFRENPESEDEGQADEQTEEEDDSGSEFEEDPSNIAAMSESEDGDDEDEDGDNQAEGGGGWEKKMSKKDKLMDKQFMKDPSEITWDTIDKKLKEIVAARGRKGTGRVEQVEQLTFLTKVAKTPAQKLEILFNVVSAQFDVNPSLSGHMPINVWKKCVQNMLVILDTLEQYPNIVVDDLVEPEENETQKGADHKGTIRIWGNLVAFLERMDVELFKSLQCIDPHTREYVERLRDEPMFFVLAQNVQNYLERIGDFKAAAKVALRRVELVYYKPQEVYDAMRKLAEQTEGGENGEMETDEEPQVVKENRGPPAFVVTPELVPRRPTFPENCRTLMDVLVSLIYKYGDERTKARAMLCDIYHHAIMDGFSNSRDLLLMSHLQDGVQHMDISTQILFNRAMAQLGLCAFRVGLVTEAHSCLSELYAGGRVKELLAQGVSQSRYHEKTPEQEKLERRRQMPYHMHINLELLEAVHLICAMLLEVPNMAANTHDAKRKVISKTFRRLLEVSERQTFTGPPENVRDHVMAATRALSKGDFQKAFDIINSLDAWKLLRNRENVLEMLKTKIKEEAVRTYLFTYSSCYESLSLDQLTTMFDLSEAHTHSIVSKMMIVEELHASWDQPTRCIVFHNVEHTRLQALAFQLTEKLSILAESNERAFEARTGGGLDGLPPRRRDGQDYAGAATGKWQENFSQGRQGNYGGRSGFGVGGRLPTFGQASGGGFSRDRAGQSRGTGGYSAGYQSTRYQDAYGGVGRTPYQTGSMVRGSQMDGSARMVSLNRGGRV* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01400 949 MobiDBLite consensus disorder prediction 883 905 - -
Eupl12g01400 949 MobiDBLite consensus disorder prediction 1 74 - -
Eupl12g01400 949 ProSiteProfiles PCI domain profile. 627 799 IPR000717 -
Eupl12g01400 949 MobiDBLite consensus disorder prediction 53 74 - -
Eupl12g01400 949 MobiDBLite consensus disorder prediction 137 160 - -
Eupl12g01400 949 Coils Coil 148 175 - -
Eupl12g01400 949 SUPERFAMILY "Winged helix" DNA-binding domain 727 798 IPR036390 -
Eupl12g01400 949 MobiDBLite consensus disorder prediction 179 199 - -
Eupl12g01400 949 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 50 659 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl12g01400 949 Pfam PCI domain 667 796 IPR000717 -
Eupl12g01400 949 MobiDBLite consensus disorder prediction 210 225 - -
Eupl12g01400 949 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 728 816 IPR000717 -
Eupl12g01400 949 MobiDBLite consensus disorder prediction 11 25 - -
Eupl12g01400 949 FunFam Eukaryotic translation initiation factor 3 subunit C 725 803 - -
Eupl12g01400 949 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 877 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Eupl12g01400 949 MobiDBLite consensus disorder prediction 173 237 - -
Eupl12g01400 949 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 943 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01400 Eupl-Chr12 30563335 30569471 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01400 1 948 Eukaryotic Initiation Factors Gene Family AT3G56150 68.377 0.0 1212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01400 K03252 - ming:122083995 1564.28