Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01380 ATGCAGAAGCAAGATCGGGGAACCACAAGGTCACAGCCACAGCCTAGTAACAACACGGGCTTGATGAACTTCTCCCATTTCTCAAGACCTGTTGCTCTTGTTAAAGCCAATCTTCAGAACATTGGTGTTGCAGCCACTCCGGGTTTAGCAAGTAATGATAAGGTGTCTGCTGCAGGTAGTAGCAACCCTGTTGAATCCACACTGATCGAGTCGACTAGCGGTTCGAGAAGTGTCTCAGTTTTTCAAAGCCAACCGGCTTCGATGCCACGAAAGGTGGATTTAAAACCATCCGTGGGTAAGCCTCCCAAAGAGCTGCTCTCTGCCGAGCAATCAGAAGCTATTTGCGGAGAAGAAGCCTTTAGGAATACTAGATCCCCAGATCAAGTTCTTGGTCAAACCTCGAGCTTTGCAGCAAGTACAGCCATAGGAAGGTCAGATAGTGAAAAGGCTGTAGAACCAGTGGTTGCATCTTCTTCCTTGTGCTCAGGCAACAGTGCTGGTGGAGCTTCAAACAATCTCAAACACGTTTTGAAGAGGAAATCTCAGGACACTGAGGAATCCGAGTACCAGAGTGAAGATGTTGAAGAAGAATCTGTGGACGTGAGGAAACCAGCTAACTCTCGAGGAAGCACAGGTGCCAAGAGAAGTCGGGCCGCTGAGGTGCATAATTTATCTGAAAGGAGGCGAAGGGATAGGATCAATGAGAAGATGCGGGCATTACAAGAACTCATACCTAACTGCAATAAGGTGGACAAAGCTTCAATGCTTGATGAGGCCATTGAGTATCTGAAGACTCTTCAGCTTCAAGTACAGATTATGTCGATGGGAACTGGAATGTATATGCCTCCGATGATGTTACCAACTGGAATGCAGCACATGCACTTGCCTCATTTTTCTCCCATGGGTGTTGGAATGGGGATGGGAATGGGCATGGGTGTGGGTTTCGGGATGGGAATGCTTGACATGACCAGTGGTTCCTCTGGTTGCCCTTTGATTCAGGTGCCCCCCATGCATGGAGCGCAGTTCCCTTGCCCACCTATTTCAGGACCCACTAGTTTACCCACCATGATGGGGTCTGGCCTTCCGATGTTCGGGCTCCCTGCTCACAGACTTCCCATGTCGATGCCTTGTGCACCCTCGGTTCCTTTTTCAGGAGGGCCTTCAACAAAACCAGTCTTGGTACCAGATGTCTCAGGTACTGCAACTCCTGTGGAAGTTCCAGATTCAGCGCACCCTTCAAGTTTAAAGGATCCAATACGAGACATAAACCCACAAATGATGCCCAAGACAATTGCCAAGTGCTCAGAAAATCAGACATCCACTCAGTGCCAGGCGACAAAAGAAGGTTTTGAACAGTCTGCCATGGTGCAAATAAATGATCAAACCTCACATGCTAGTAGCAATGGAGACGTCAACTCTACCAATAGAAATGGATTGTATCTAGTAGAGCAACTAGATAGACTGAATAGCAGTTACCATTAA 1482 0.4784 MQKQDRGTTRSQPQPSNNTGLMNFSHFSRPVALVKANLQNIGVAATPGLASNDKVSAAGSSNPVESTLIESTSGSRSVSVFQSQPASMPRKVDLKPSVGKPPKELLSAEQSEAICGEEAFRNTRSPDQVLGQTSSFAASTAIGRSDSEKAVEPVVASSSLCSGNSAGGASNNLKHVLKRKSQDTEESEYQSEDVEEESVDVRKPANSRGSTGAKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGTGMYMPPMMLPTGMQHMHLPHFSPMGVGMGMGMGMGVGFGMGMLDMTSGSSGCPLIQVPPMHGAQFPCPPISGPTSLPTMMGSGLPMFGLPAHRLPMSMPCAPSVPFSGGPSTKPVLVPDVSGTATPVEVPDSAHPSSLKDPIRDINPQMMPKTIAKCSENQTSTQCQATKEGFEQSAMVQINDQTSHASSNGDVNSTNRNGLYLVEQLDRLNSSYH* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01380 493 MobiDBLite consensus disorder prediction 159 224 - -
Eupl12g01380 493 MobiDBLite consensus disorder prediction 46 102 - -
Eupl12g01380 493 SMART finulus 223 272 IPR011598 GO:0046983
Eupl12g01380 493 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 281 IPR036638 GO:0046983
Eupl12g01380 493 CDD bHLH_AtPIF_like 217 279 IPR047265 -
Eupl12g01380 493 Pfam Helix-loop-helix DNA-binding domain 221 267 IPR011598 GO:0046983
Eupl12g01380 493 FunFam Basic helix-loop-helix transcription factor 212 275 - -
Eupl12g01380 493 Gene3D - 212 275 IPR036638 GO:0046983
Eupl12g01380 493 PANTHER TRANSCRIPTION FACTOR PIF3 10 440 IPR044273 GO:0003700|GO:0006355
Eupl12g01380 493 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 266 IPR011598 GO:0046983
Eupl12g01380 493 MobiDBLite consensus disorder prediction 53 86 - -
Eupl12g01380 493 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01380 Eupl-Chr12 30378199 30380683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01380 5 358 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 41.737 3.79e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl12g01380 HLH 4.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01380 K12126 - nnu:104585579 611.298