Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01372 ATGGCTAGGAAGAAGGTGAAGCTTGCATGGATTGCTAATGACTCAGCTAGGAGAGCCACTTATAACAAAAGAAAGAAGGGTTTGATGAAGAAGATGAGTGAGCTTAGCATCCTCTGTGGGGTCAGTGTATGTGCGATCATTTACAGTCCGTATGATTCAAAGCCAGACGTTTGGCCATCCCCACCGGACGCACAACGTATTCTTGCTAGGTTCAAGAGCTTGCCGGAGATTGAGCAAAGCAAGAAAATGTTGAACCAAGAAGGGTTCCTTAGGCAGAGTATTGCCAAAATGAAGGAACAGCTGAGAAAGCAGGAGAAGGATAATCGAGAGTACGAGATAACACAACTCATGTATCAAAGCTTGGCAGGTCAGGGTTTGCATGATGTGGGTATCGAGGATTTGAACGATATGGCATGGTTGATTGAGGAGAAGATGAAGATGATTTTAGAAAGGATGGAGCTTCTTAAGAGGGAAACTCCCAAACTCGTGGCACTTGATGATGAGACGATGAACAATGGAGAGGGTGGTGGAGAGGATAAGATGGCCTTAGCCATGGAGGCTCTGCAGAGACAACCATGGTTCATGGAAGGGATGAACCCACATGAATACATGGGTTGTGGTGGGGATGAGATGATGTTTCCATATGTGGATGGTAGTTCATGGTCTAATGCTTTCTTTCCTTGA 684 0.4547 MARKKVKLAWIANDSARRATYNKRKKGLMKKMSELSILCGVSVCAIIYSPYDSKPDVWPSPPDAQRILARFKSLPEIEQSKKMLNQEGFLRQSIAKMKEQLRKQEKDNREYEITQLMYQSLAGQGLHDVGIEDLNDMAWLIEEKMKMILERMELLKRETPKLVALDDETMNNGEGGGEDKMALAMEALQRQPWFMEGMNPHEYMGCGGDEMMFPYVDGSSWSNAFFP* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01372 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl12g01372 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl12g01372 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl12g01372 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl12g01372 227 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Eupl12g01372 227 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Eupl12g01372 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Eupl12g01372 227 Coils Coil 94 114 - -
Eupl12g01372 227 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Eupl12g01372 227 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Eupl12g01372 227 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Eupl12g01372 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01372 Eupl-Chr12 30328822 30329505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01372 1 156 Type I MADS-box Gene Family AT5G48670 56.051 4.83e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl12g01372 SRF-TF 1.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01372 - - nnu:104585605 310.457