Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01345 ATGAAAAGCAAGATAGTAGTGTCATGTGGCTCACTCATCGTTCTTGCTGTCATCATCGGCGTTGTAGTCGGTGTAGGCCATTCTAGTAAATCTTCCAAAGGATCCGACAATGTCATGTCGACAGGGATGAAAGCTGTTTCCACCATTTGTGCCCCTACTGACTACAAGGAAGCTTGTATTCGTACTCTTACCCCAGTTGCCAGTAATGCCAGCGTTAGCCCAACGGATCTCCTAAAGGCTGCTGTTCAGGCCACCATCGACGAAGTTAAAACAGCATTCGAAGTGTCCGTTGCACTCAGAAATTCCACCAACAACTCCACCCAAAAGATGGCACTGGATGATTGCAAGGATTTGTTACAATTCGCTGTCGATGAGCTCCAAGCTTCATACTCAATGGTTGGTGATAATGAATTGCACACGCCGAATGATCGTGCCGCCGAGCTTAAGAATTGGTTGAGCGCCGTGATCTCGTACCAACAAACATGCCTTGATGGCATTAGCCAACCTGATTTGAAGACCTCGATGCAAAACGGCCTCCTCAATGCTACTCAACTTACTAGTAATGCTCTAGCTATTGTCACCGAAATCTCGAATCTCCTCTCCGCCTTCGATATCCAAATTCCAACAAATCCCAACTCTCGTCGACTTCTCGACACCGAGGTCGATAAACATGGGCGTTACCCCACTTGGTTTTCGGCGACAGATCGTAAGCTTTTGGCATTCCAGGACAAGGGTAAGGTGAAGCCTAATGCAGTTGTGGCCAAGGATGGCAGTGGGCAATTCAAAACTATTGCTGCAGCTCTTGCTGCATACCCCAAAAACAATAAGGGAAGATATGTAATCTATGTTAAGGCCGGCATCTACAAGGAGTACATTATAGTCACTAAGGATCAGGTTAATATCTTCATGTATGGAGATGGACCGAGGAAGACGATCGTCACCGGACGCAAGAACAACCGGGAGGGTGTCTCCACCTACCAGACTGCCTCTTTCTCGGCGATCGGAAAGGGGTTTATCGCCAAGTCGATGGGATTCCAAAACACCGCTGGTCCCGAAGGGCACCAGGCAGTGGCTCTCCGTGTCCAGTCCGACATGTCGGCTTTCTTCAACTGCAGGATGGATGGGTACCAAGACACCTTGTATGTGCAAGCCCATCGCCAATTCTACCGCAATTGCGTCATCTCCGGCACCGTGGACTTCATCTTTGGTGACTCTGCCACAGTGATCCAAAACTCTTTAATCATTGTCAGGAAGCCCATGGACAGCCAACAAAACACTGTGACTGCTCATGGGAGGTCAGACAAGCGTGAGACCACTGGTCTGGTGATCCACAATTGCCGCATTGTTCCAGAACAGAAGCTCTTCCCCGCGAGGTTCAAGATCCCCACATACTTGGGTCGTCCATGGAAACAATACTCGAGGACGATTATCATGGAATCAACACTAGGTGATTTCATCCAAGCCGAAGGTTGGTTGCCTTGGGCCGGGGACTTCGCACTCAACACATTGTACTATGCCGAGTATGGAAACCGAGGTCCAGGTGCTAAGACTAACAGGAGGGTTAGATGGAAGGGTTACAAGGTGATCACCAATAGAAAGGAGGTTCTTCAATTCACAGCTGGTCCATTCATCCAAGGGAATATGTGGTTGAGAACCACAGGAGCACCTTTCCTCCTTGGGTTGAAGAGCTAA 1692 0.4888 MKSKIVVSCGSLIVLAVIIGVVVGVGHSSKSSKGSDNVMSTGMKAVSTICAPTDYKEACIRTLTPVASNASVSPTDLLKAAVQATIDEVKTAFEVSVALRNSTNNSTQKMALDDCKDLLQFAVDELQASYSMVGDNELHTPNDRAAELKNWLSAVISYQQTCLDGISQPDLKTSMQNGLLNATQLTSNALAIVTEISNLLSAFDIQIPTNPNSRRLLDTEVDKHGRYPTWFSATDRKLLAFQDKGKVKPNAVVAKDGSGQFKTIAAALAAYPKNNKGRYVIYVKAGIYKEYIIVTKDQVNIFMYGDGPRKTIVTGRKNNREGVSTYQTASFSAIGKGFIAKSMGFQNTAGPEGHQAVALRVQSDMSAFFNCRMDGYQDTLYVQAHRQFYRNCVISGTVDFIFGDSATVIQNSLIIVRKPMDSQQNTVTAHGRSDKRETTGLVIHNCRIVPEQKLFPARFKIPTYLGRPWKQYSRTIIMESTLGDFIQAEGWLPWAGDFALNTLYYAEYGNRGPGAKTNRRVRWKGYKVITNRKEVLQFTAGPFIQGNMWLRTTGAPFLLGLKS* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01345 563 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Eupl12g01345 563 FunFam Pectinesterase 42 197 - -
Eupl12g01345 563 SUPERFAMILY Pectin lyase-like 248 560 IPR011050 -
Eupl12g01345 563 FunFam Pectinesterase 244 561 - -
Eupl12g01345 563 Pfam Pectinesterase 250 547 IPR000070 GO:0030599|GO:0042545
Eupl12g01345 563 SMART PMEI_2 41 192 IPR006501 GO:0004857
Eupl12g01345 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 197 IPR035513 -
Eupl12g01345 563 NCBIfam pectinesterase inhibitor domain 32 195 IPR006501 GO:0004857
Eupl12g01345 563 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Eupl12g01345 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Eupl12g01345 563 PANTHER PECTINESTERASE 16 551 - -
Eupl12g01345 563 Gene3D - 244 561 IPR012334 -
Eupl12g01345 563 CDD PMEI-like_3 48 198 - -
Eupl12g01345 563 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01345 Eupl-Chr12 30095194 30097073 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01345 5 561 Carbohydrate Esterase AT3G05610 44.956 3.61e-174 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01345 K01051 - egr:104417569 791.571