Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01336 ATGGAGACTAAATTTGGTGGGAAAGGTCATCAATTTTACGGTCCGGGTTCACCAGATTTTGTGTTGAAGGAGAAGGATTTGAAGGGGGTTGGTAAGAGGAGTTTGGAATGGGATTTGAATGACTGGAAGTGGGATGGCGATCTTTTCCTCGCTAGCCCTTTGAATTCCGTTCCGTCTGATTACAGGAGCAGGCAGTTGTTACCAGTCAGAGCTGAAATTCCGGCAGCTGGGCGTTTGTCAAACAGTTCATCTTCTTGCTCGGATGAGATCAATCCAGGGAGTGAGAAAGGAAAAAGGGAATTGGAGAAACGGAGGAGAGTAGTCATGATTGAAGAAGATGAGATGAATGACGAAGCAGGGAACCTTACTTTGATGCCTGGTGGGCATGGTTATCCGATCGCGGAAGGTGAGGTTGCGAATTGGGACGGGAAGAATGGAAAGAAGACTAAATTGCTGGGGACTACTTCAAATCGTGCAATTTGTCAGGTGGAAGGTTGTGGGTCTGATATGAGCAATGCCAAGGACTATCATAGACGGCATAAGGTCTGTGATATGCACTCCAAGGCCAGTAGGGCACTTGTAGGAAATGTTATGCAGCGGTTCTGTCAACAGTGCAGCAGGTTTCATATTCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTTTGGCGGGACATAACAGAAGGAGGAGGAAAACACATCCTGATGCTGTTGTAAATGGAAGTTCCTTGAATGATGATCAGGCTAGTAGTTATCTATTGATAAGTCTACTAAGAATTCTCTCCAATATGCATTCAAATAACTCAGACCAGACGAAGGATCAGGATCTTTTGTCTCATCTTTTGAGGAACCTTGCTGGCTTTGCTGGTACATTTGATGGAAGGAACATATCTGGGCTCCTGCAGGAATCTCAAGATTTGCTTAATGTTGGGGCCACTGCTGGAACATCCTCAGAAATAGTGCCAGATTTGCTTTCAAATGGTTCGGAACCCTCTAGGCTTTTGAGCTCAACCTCTGAAATAAATGGCGGCATTGGTGTTCAAGGCCCTCAGCCAATGCCCAGAGATCAATATGTCAATGTTGCTGTATCTGAGATGCCGCGGAAAGGAATCATTATAGATAATGTTCGGGGCAGAGCTCTACAAACCGTACCTTCTCCAAATTCTACAACCCTCTTTTCAATAAAAGACAGCCCTCCAGCCAAATCAGAAGCCCAGGATTCTATTGCGGGGAGGATCAAGTTAAATAATATTGATTTGAATAACACCTATGATGACTCACAAGACTGCATAGAAGGCTTAGAGAGGTCACGGGCCCCTGCCAATTTGGGGACTTGTTCACTGCAATTCCCTTCATGGCTGCAGCAAGACTCTCACCAGTCAAGTCCACCTCGGACAAGTGGGAATTCAGATACAGCATCTGCCCAGTCACCATCTAGTTCCAGTGGAGATGCTCAGAGCCGCACAGATCGAATTGTTTTCAAACTCTTTGGGAAAGACCCAAATGATTTCCCTCTTGTTTTGCGATCCCAGGTATTTTGTGAGCCTTGCAATTGTTTCACAGTGCGGTTAGTTTTCAGACTGATGTTATCTAATATTTTAAATTTGCAGATCCTCAATTGGTTATCCCACAGTCCTACGGACATCGAGAGCTACATCAGGCCCGGTTGTATCATTCTAACAATTTACCTTCGTCTAGCAGAGTCCACGTGGGAGGAGCTTTGCTGTGATCTGAGCTCCAGTCTGAGTAGGCTTTTGGATGTCTCCAACAACACTTTTTGGAGAACAGGATGGGTCTATACCAGAGTGCAGCATCAAATAGCATTCATTTACAATGGTCAGGTTGTGCTAGACACGTCTTTACCACTCAAAAGTCATAATCATTGTAGAATCTCAACTGTCAAACCAATTGCAGTTTCTGCATCTGAGAGAGTTCAGTTTATAGTTAAAGGGTATAATCTGTCTTGGCCCACCACGAGGTTACTCTGCGCACTAGAAGGGAAGTATTTGCTCCAGGAAGCAACTCATGACTTGGTGGAGAGCACTGACACCTTCAAGGAGCATGATGAGCTCCAGTGCCTCACCTTCCCTTGCTCTGTCCCTGATGTAACTGGCAGAGGATTCATTGAGGTTGAGGACCATGGTCTCAGCAGCGGCTTCTTTCCATTCATAGTTGCAGAACAGGATGTTTGTTCAGAGATCCGTATGTTGGAGAGTGCAATAGAGGTGGTTGAGTCCGATGATGACATCCAGGGGACAACTCGAAAAATGGATGCCAAGAATCAAGCCCTGGAGTTTATCCATGAAATGGGTTGGCTTCTTCACAGGAGTCGCTTGAGGTCTAGGTTGGGTCACATAGATTCTGACTCGGATGTCTTTCCTTTCACACGGTTCAAGTGGCTCATGGAGTTCTCCGTGGACCATGGTTGGTGTGCTGTAGTAAAAAAACTCTTAGATATTCTGTTCGATGGAACTGTCAATTCAGGTGAACATTCTTCTGTTGAGCTTGCTTTGTCAGAGATGAGCCTCCTCCACAGAGCTGTGAGGAGAAGCTGTATGCTGATGGTGGAACTCCTGTTGAGATACGTCCCAGATAAAGCTTTGGATACGGAAGGATCCAAACCCAAGCAACAGGTCGACAGAGGATCTGATAGCTTCTTGTTTAGACCTGATGCAATTGGCCCTGCGGGCGTGACACCTCTTCATGTTGTGGCCAGTAGAGATGGTTCTGAGATTGTGCTGGATGCGTTAACCAATGATCCTGGAATGGTGGGAATTGAAGCATGGAAGAGTGCTCGTGACAATACTGGTTTTACACCTGAAGATTATGCACGGCTGAGAGGACATTATTCTTACATCCATCTGGTCCAGAAGAAAATTAACAAGAAATCAGAAACTAGGCATGTGATCCTTGACATGCCCAGTGTTCTCTCAGACTGCAATAGCAACCAGAAGCAAACCAACATGCTGAACTCAACCAAGGTTACTGGCTTTCAGGTCGACAAGACTGAATTGAGACCCAAACAGATTCAGCAGTACTGCAAACTCTGCGATCAGCAGCTATCTTATGGTAACACTAGCAGATCACTGGTGTACAGACCAGCAATGCTCTCAATGGTGGCCATTGCCGCAGTCTGTGTCTGCGTTGGCCTGCTCTTCAAAAGCTCACCTGAAGTTCTGTGTGTGTTCCCACCATTCAGGTGGGAATTGCTGGATTATGGATCTATCTAA 3237 0.4581 METKFGGKGHQFYGPGSPDFVLKEKDLKGVGKRSLEWDLNDWKWDGDLFLASPLNSVPSDYRSRQLLPVRAEIPAAGRLSNSSSSCSDEINPGSEKGKRELEKRRRVVMIEEDEMNDEAGNLTLMPGGHGYPIAEGEVANWDGKNGKKTKLLGTTSNRAICQVEGCGSDMSNAKDYHRRHKVCDMHSKASRALVGNVMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGSSLNDDQASSYLLISLLRILSNMHSNNSDQTKDQDLLSHLLRNLAGFAGTFDGRNISGLLQESQDLLNVGATAGTSSEIVPDLLSNGSEPSRLLSSTSEINGGIGVQGPQPMPRDQYVNVAVSEMPRKGIIIDNVRGRALQTVPSPNSTTLFSIKDSPPAKSEAQDSIAGRIKLNNIDLNNTYDDSQDCIEGLERSRAPANLGTCSLQFPSWLQQDSHQSSPPRTSGNSDTASAQSPSSSSGDAQSRTDRIVFKLFGKDPNDFPLVLRSQVFCEPCNCFTVRLVFRLMLSNILNLQILNWLSHSPTDIESYIRPGCIILTIYLRLAESTWEELCCDLSSSLSRLLDVSNNTFWRTGWVYTRVQHQIAFIYNGQVVLDTSLPLKSHNHCRISTVKPIAVSASERVQFIVKGYNLSWPTTRLLCALEGKYLLQEATHDLVESTDTFKEHDELQCLTFPCSVPDVTGRGFIEVEDHGLSSGFFPFIVAEQDVCSEIRMLESAIEVVESDDDIQGTTRKMDAKNQALEFIHEMGWLLHRSRLRSRLGHIDSDSDVFPFTRFKWLMEFSVDHGWCAVVKKLLDILFDGTVNSGEHSSVELALSEMSLLHRAVRRSCMLMVELLLRYVPDKALDTEGSKPKQQVDRGSDSFLFRPDAIGPAGVTPLHVVASRDGSEIVLDALTNDPGMVGIEAWKSARDNTGFTPEDYARLRGHYSYIHLVQKKINKKSETRHVILDMPSVLSDCNSNQKQTNMLNSTKVTGFQVDKTELRPKQIQQYCKLCDQQLSYGNTSRSLVYRPAMLSMVAIAAVCVCVGLLFKSSPEVLCVFPPFRWELLDYGSI* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01336 1078 MobiDBLite consensus disorder prediction 391 410 - -
Eupl12g01336 1078 SUPERFAMILY Ankyrin repeat 811 958 IPR036770 -
Eupl12g01336 1078 MobiDBLite consensus disorder prediction 77 91 - -
Eupl12g01336 1078 Gene3D - 803 1002 IPR036770 -
Eupl12g01336 1078 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Eupl12g01336 1078 MobiDBLite consensus disorder prediction 456 489 - -
Eupl12g01336 1078 MobiDBLite consensus disorder prediction 77 102 - -
Eupl12g01336 1078 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 96 893 IPR044817 GO:0003677
Eupl12g01336 1078 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Eupl12g01336 1078 SUPERFAMILY SBT domain 159 240 IPR036893 GO:0003677|GO:0005634
Eupl12g01336 1078 Gene3D - 153 222 IPR036893 GO:0003677|GO:0005634
Eupl12g01336 1078 Coils Coil 98 118 - -
Eupl12g01336 1078 Pfam SBP domain 161 234 IPR004333 GO:0003677
Eupl12g01336 1078 MobiDBLite consensus disorder prediction 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01336 Eupl-Chr12 29991289 30000421 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01336 31 1077 SBP-box Gene Family AT3G60030 50.703 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Eupl12g01336 SBP 5.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01336 - - nnu:104607129 1506.12