Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01308 ATGGTAGCAGAAGCAGAAATTGTTTGTCATCGGAGCGTCCCTGTTTTGGATGCTCAGTACCGATGCATCACTAAACGAAGCAATCTTCAGAAGATCGAAGACATCGTGGACATCTCATCGCCTTCGACGCCGGTTTTTCACGAAATTCGCGCTTCCGATTCAGTTTCAACCGATATTTCTCTCTCTGACGTGGATGAGAGTTCTCCAGATACCATCTCAGATTGTGCACTTGAATCTGCTATTCTCCAGTTTGTTCCGAGCATCCGTTCTGGTAGCTTTGCGGACATTGGACCTCGGAGATTCATGGAAGACGAACATATACGAATCGATGATCTATCCTTGCAACTGGGGTCGCGCTTCAGATTTCCTACACCGAGTGCGTTTTATGGGGTATTTGATGGTCATGGAGGCCCTGAGGCAGCAGCATATATCAGGAAGAATGTGATTAGATTCTTTTTTGAAGATGCTGATTTCCCACAAACATCTGAGGCTGAAGATATTTTCTTAGAAGAGGTTGAGAATTCTGTTTGTAAAGCATTTCTTCTGGCAGATCTTGCTTTGGCTGATGACTGCACTATTAGCAGTTCTTCTGGGACAACAGCACTTACTGCTCTGATACTTGGAAGGCTTTTACTGGTAGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGTCGTAAAGGGGAGGCAATCGAGATGTCTCAAGACCACAAGCCCATCTATGAATCAGAACGCAAGCGAGTTGAGGAGTCAGGTGGGTACGTAGACGATGGGTATCTGAATGGCGTACTCTCGGTCAGCCGGGCACTAGGGGACTGGGACATGAAATTACCACGGGGCTCTGCTTCGCCCCTCATAGCTGAGCCAGAGTTCCGTCAGGAGGTTCTCACAGAAGATGACGAGTTTCTCATCATTGGATGTGATGGGATCTGGGATGTAATGTCAAGCGAGCACGCGGTCAGCATTGTCCGTCGTGGGCTCAGACGGCACGATAACCCGGAGCAGGGCGCCAGGGATCTTGTCATGGAGGCGCTCCGCCTCAACACATTTGACAACCTCACAGTGATTGTTGTGTGCTTCTCCTCCACGGGGGAATCGTCACCAACTCCAGAGCAGAGATTAAGGTGCTGCAGCCTTTCTGCAGAAGCCCGGTGTAACCTGAAGAGCTGGCTGGACGACAGTGGCAGATGTTAG 1191 0.4945 MVAEAEIVCHRSVPVLDAQYRCITKRSNLQKIEDIVDISSPSTPVFHEIRASDSVSTDISLSDVDESSPDTISDCALESAILQFVPSIRSGSFADIGPRRFMEDEHIRIDDLSLQLGSRFRFPTPSAFYGVFDGHGGPEAAAYIRKNVIRFFFEDADFPQTSEAEDIFLEEVENSVCKAFLLADLALADDCTISSSSGTTALTALILGRLLLVANAGDCRAVLCRKGEAIEMSQDHKPIYESERKRVEESGGYVDDGYLNGVLSVSRALGDWDMKLPRGSASPLIAEPEFRQEVLTEDDEFLIIGCDGIWDVMSSEHAVSIVRRGLRRHDNPEQGARDLVMEALRLNTFDNLTVIVVCFSSTGESSPTPEQRLRCCSLSAEARCNLKSWLDDSGRC* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01308 396 SUPERFAMILY PP2C-like 84 361 IPR036457 -
Eupl12g01308 396 PANTHER PROTEIN PHOSPHATASE 2C 76 357 IPR015655 GO:0004722|GO:0006470
Eupl12g01308 396 Pfam Protein phosphatase 2C 99 351 IPR001932 -
Eupl12g01308 396 CDD PP2Cc 88 359 IPR001932 -
Eupl12g01308 396 Gene3D - 78 365 IPR036457 -
Eupl12g01308 396 SMART PP2C_4 79 357 IPR001932 -
Eupl12g01308 396 FunFam Probable protein phosphatase 2C 22 73 362 - -
Eupl12g01308 396 ProSiteProfiles PPM-type phosphatase domain profile. 89 359 IPR001932 -
Eupl12g01308 396 ProSitePatterns PPM-type phosphatase domain signature. 128 136 IPR000222 GO:0043169
Eupl12g01308 396 SMART PP2C_SIG_2 104 359 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01308 Eupl-Chr12 29774827 29778213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01308 102 391 PP2C-type Phosphatase Gene Family AT3G62260 69.625 1.02e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Eupl12g01308 PP2C 2e-61 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01308 K14803 - msin:131225114 586.26