Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01300 ATGACAACCGCGGAGGCAGCTCCAGCTTCACTGGGCCCCCGGTATGCTCCAGATGACCCTACTCTCTCAAAACCTTGGAAAGGATTGATTGATGGAAGCACTGGCGTTTTGTACTACTGGAACCCCGAGACCAACATCACTCAATATGAAAGACCAGCCTCTTTGGCTCCTCCAGTGCCGCCTGGCCAACCTCCCGCAGCTTCTACACCAAAGTTGGCTCCAATACCCATGGCCCGGACACTGCAACCTAACGTGCTGGCTCAGCAGGGGCACCAAATGAGCCAAGCTCCACAATATCATGTGCAGCAGATGTCCCAAGCTGCACAACAGCAGGGGCAGCTAATGCCACAACAGCATGGGTCACAAATGGTGCTGGCCGCTCAACAGCAGAGCCCACAAATGCCACAACAGGGCTCACAAATGGCACAATCCACGCAACAGCAGGGACAGCTAATGCCACAGCAGCTCAGGCAGCAAATGTCGCAACAGCAAACACTGCGACATCAAGGGCAGCAAATGCCACATCAGCAAGGGCAACAGTTTCCACATCAGCAGTTTCAACCAATGCCGTATCAGCAAACCCCCCATCCACAGGGGCAACAAATGTCTCAACAGCAGGCACAGCATTTCTCATATCAACAGGGACAGCAGTTTCCACCCCAACAAGGGCAGAAAACAGGGTTCCCACAGAGGGAGGATATTGAGTTTCGACAAGGAAAGCAAATTGGAATTTCGCCATCTCAGATCCAACAAGCTGGGGTCTCATCCCTTCACAATCTGCCTGCTGGCACTCATTCTGCTCAGATTCCACAGACGGGTGTTCAGACACTCCAGCAACAACAATTTGGCAGCTCTTCTGTTAATGTACCACAAACTGGTTCATCTATGGTTCAATTGCCACAAACTGGGAATGATTCGATCCACCAACAACAAATGGGTGGACCCATGGGTCGAAATCAAATGGGGCCAGAAATGATGCGTAATCAGCAATCGGTTGTGCCTCCTCTTGGATTGAAAATCGGTAATGAAGAAGATCGGCATGGAAGAGCTGGAAATGGATTTTATTTCAATGCTAACAAGGAAGGGCCAGTGGTGGTTTCTCAGCAGCCAAAGCGTGCTGCAATTCCCTTGGGACAAAATCAACAGGTTGGTATTTTGCACCAGGACATGAGAATGGGTCCTCAAAGTGTTACACCTGGTCATGCTGGTGTATTGAACATTGTCGCAGGGCACGCGATGTACAATCATGCTCCCAGTGGTCAAGCATTTTCTGATAATGCTCCCATGAGGCCACCTTCAATGCTTGCCTTAACAGATACAAATCTTTCACCTGTTGAAGTCTACTGTCAACAGCATGAAGTTACTGCAACGGGTGACAATATTCCTGCTCCCTTCATGACCTTTGAAGCTACTGGTTTTCCTCCAGAGATACTTAAAGAGATACATAGTGCTGGTTTCACATCTCCCACACCGATTCAGGCGCAGACATGGCCAATTGCATTACAAAGTAGGGACATAGTGGCCATTGCCAAAACAGGTTCTGGGAAGACCTTGGGCTATCTCATTCCTGCCTTAATTCATCTTAGAAGATGCCGTAATAATCCTCAGAATGGTCCAACAGTGTTGGTTCTGGCTCCTACTCGGGAGCTTGCCACACAAATACAAGATGAGGCCATCAAGTTTGGTCGATCTTCTAGGTTCTCTTGCACGTGCTTATACGGTGGAGCTCCGAAGGGCCCTCAGCTTAAAGAATTAGATCGGGGAGCAGATATTGTTGTCGCAACCCCTGGTCGGCTCAATGACATCCTTGAGATGAAGAAGATCGACTTCCGTCAAGTTTCTTTCCTGGTACTTGATGAGGCAGATCGGATGCTTGACATGGGTTTTGAACCTCAAATACTTAAAATTGTGAATGAGATCCCTCCACGCAGGCAAACTCTCATGTACACTGCGACCTGGCCCAAGGAGGTCAAAAAAATAGCAGGAGACCTATTGCTGAATCCTGTTCAGGTGAACATTGGCAGTGTTGATGTGCTTGCTGCGAACAAGGCCATCACGCAGTATGTTGAGGTGGTCCCACAAATGGAGAGGCAGAGGCGCTTGGAACAGATTCTTAAAGCCCAAGAACGTGGATCCAAAGTCATCATCTTCTGTTCAACAAAGAGGTTGTGTGACCAGCTTGCACGCAGTATTGGGCGCAACTTTGGTGCTGCTGCAATTCATGGAGATAAGTCTCAGGGTGAGAGGGACTGGGTTCTGAACCAGTTCCGCAGTGGAAAGTCCCCAATTTTAGTTGCCACTGATGTTGCTGCTCGGGGACTTGACATTAAAGATATTAGGGTGGTGATCAACTATGATTTTCCAACGGGGATTGAGGACTATGTCCACCGTATTGGAAGAACTGGGAGGGCTGGCGCTACAGGGGTGTCCTACACTTTCTTCTCCGACCAGGACTGGAAGTATGCTGCTGATCTGGTGAAACTCTTGGAGGGAGCGAACCAGCGAGTGCCACCAGAAGTGCAGGAGATGGCTATGCGTGGTGGTCCCAGTTTTGGCAAGGGCCGGGGTGGGGTGAACCGTTGGGATTCTGGAGGCCGTGGTGGCGAGAGAAACAGTGGCTTTGGTGGCCGTGGTGGCGAGAGAAATGGTGGCTTCAGTGGCCGTGGTGGCGAGAGAAGCGGTGGCTTTGGTGGCCGTGGTGGCGAGAGAAACGGTAGCTTTGGTGGCCGTGGCGAGAGAAACGGTAGCTTTGGTGGCCGTGGTGGGAGAAACGACTTCTTTGGCGGACGTGGAAACCAGGGACGGGGATTCACTGGGCCTGGTGGTGGTCGTGTTGGTCGGGGCCGGAATGACCGGGGTCCACATGACCGGTACAACAATACCAATACGGATAGGCGGGGACGTTATGACAATATAAGAGGCATTGCAGATAGGAGTAGAGGCAGAAGTTACAGTTCAAGTCCTGATAGGGTTCGGACGTGGGATTATAAAAGAAGCAGAAGCCAAAGCAGGAGCAGGAGTCGTAGCCGGAGCTGGACCCGTAGCCGCAGCCGTAGTAGGAGCAGGAGCAGGAGCAGGAGCCACAGTCCTACCTATGACAGATTTGAGAGGTCGGACGGACGGAATTACGACCGGGATCCCAAGGGTCCTGAATCTGTGGCTCCTCCGGAATCACGGATGCCTCCTATGTCACCAGTTGCGCAAGGTGGTTCATTAGCAGAAGTCAAGCCCCCAGAGCAGCTGCCAGTAGCAGTAGCTGAGAGTGCTGAACTCGAACATCCTGTGGCCGGAGTGGAGCCAAGAATTCAGCCAATTGCTGATCAGAACTAA 3330 0.5126 MTTAEAAPASLGPRYAPDDPTLSKPWKGLIDGSTGVLYYWNPETNITQYERPASLAPPVPPGQPPAASTPKLAPIPMARTLQPNVLAQQGHQMSQAPQYHVQQMSQAAQQQGQLMPQQHGSQMVLAAQQQSPQMPQQGSQMAQSTQQQGQLMPQQLRQQMSQQQTLRHQGQQMPHQQGQQFPHQQFQPMPYQQTPHPQGQQMSQQQAQHFSYQQGQQFPPQQGQKTGFPQREDIEFRQGKQIGISPSQIQQAGVSSLHNLPAGTHSAQIPQTGVQTLQQQQFGSSSVNVPQTGSSMVQLPQTGNDSIHQQQMGGPMGRNQMGPEMMRNQQSVVPPLGLKIGNEEDRHGRAGNGFYFNANKEGPVVVSQQPKRAAIPLGQNQQVGILHQDMRMGPQSVTPGHAGVLNIVAGHAMYNHAPSGQAFSDNAPMRPPSMLALTDTNLSPVEVYCQQHEVTATGDNIPAPFMTFEATGFPPEILKEIHSAGFTSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPALIHLRRCRNNPQNGPTVLVLAPTRELATQIQDEAIKFGRSSRFSCTCLYGGAPKGPQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSFLVLDEADRMLDMGFEPQILKIVNEIPPRRQTLMYTATWPKEVKKIAGDLLLNPVQVNIGSVDVLAANKAITQYVEVVPQMERQRRLEQILKAQERGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFFSDQDWKYAADLVKLLEGANQRVPPEVQEMAMRGGPSFGKGRGGVNRWDSGGRGGERNSGFGGRGGERNGGFSGRGGERSGGFGGRGGERNGSFGGRGERNGSFGGRGGRNDFFGGRGNQGRGFTGPGGGRVGRGRNDRGPHDRYNNTNTDRRGRYDNIRGIADRSRGRSYSSSPDRVRTWDYKRSRSQSRSRSRSRSWTRSRSRSRSRSRSRSHSPTYDRFERSDGRNYDRDPKGPESVAPPESRMPPMSPVAQGGSLAEVKPPEQLPVAVAESAELEHPVAGVEPRIQPIADQN* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01300 1109 Pfam DEAD/DEAH box helicase 490 660 IPR011545 GO:0003676|GO:0005524
Eupl12g01300 1109 Gene3D - 677 847 IPR027417 -
Eupl12g01300 1109 SMART helicmild6 721 805 IPR001650 -
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 272 292 - -
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 1003 1025 - -
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 845 1109 - -
Eupl12g01300 1109 SMART ww_5 21 54 IPR001202 GO:0005515
Eupl12g01300 1109 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 439 844 - -
Eupl12g01300 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 537 822 IPR027417 -
Eupl12g01300 1109 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 700 844 IPR001650 -
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 948 977 - -
Eupl12g01300 1109 CDD SF2_C_DEAD 685 814 - -
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 1026 1052 - -
Eupl12g01300 1109 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 466 494 IPR014014 GO:0003724
Eupl12g01300 1109 ProSiteProfiles WW/rsp5/WWP domain profile. 20 54 IPR001202 GO:0005515
Eupl12g01300 1109 FunFam ATP-dependent RNA helicase RhlB 675 847 - -
Eupl12g01300 1109 Gene3D - 441 676 IPR027417 -
Eupl12g01300 1109 SUPERFAMILY WW domain 14 53 IPR036020 GO:0005515
Eupl12g01300 1109 CDD WW 25 52 IPR001202 GO:0005515
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 1 26 - -
Eupl12g01300 1109 MobiDBLite consensus disorder prediction 128 228 - -
Eupl12g01300 1109 ProSitePatterns WW/rsp5/WWP domain signature. 26 52 IPR001202 GO:0005515
Eupl12g01300 1109 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 497 671 IPR014001 -
Eupl12g01300 1109 FunFam probable ATP-dependent RNA helicase DDX17 432 674 - -
Eupl12g01300 1109 SMART ultradead3 485 688 IPR014001 -
Eupl12g01300 1109 Pfam Helicase conserved C-terminal domain 699 805 IPR001650 -
Eupl12g01300 1109 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 617 625 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01300 Eupl-Chr12 29656441 29667418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01300 454 845 Eukaryotic Initiation Factors Gene Family AT3G19760 33.924 1.97e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01300 K12823 - ming:122088931 1077.77