Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01287 ATGGATGTTAGTCGGCAAGGTTTCAGCTCTGCAACTCAAAGTGAAGAAGAAATGGACCTCAGGAGAGGTCCATGGACTGTTGAAGAAGATCTCGTACTCAACAATTTCATTGCCATCCATGGTGAAGGTCGCTGGAACTCCCTTGCTCAATCCGCAGGTTTGAAACGAACTGGTAAAAGCTGCAGATTAAGATGGTTGAACTACTTACGACCCGATGTTCGACGTGGAAACATAACCCTCGAAGAACAGCTTTTAATTCTCGAACTCCATTCTCGTTGGGGAAATCGGTGGTCGAAAATCGCTCAACACTTACCAGGAAGAACAGATAACGAGATAAAGAACTACTGGAGAACTAGGGTTCAAAAGCACGCAAAGCAACTTCAATGCGACGTCAACAGCAAACTCTTCAAAGACACCATGCGTTATCAATGGATGCCAAGGTTAGCAGAAAGAATCCGGGCAGCAGCACCACCATCTTCGGGCGGCCCCACCAATCACTATCTCAACAACAATATTCCAGACGTCACATGCGGTCAAGTTCTGCCGCCGGACGACAGCAACTACCACTTCGGGGGTGCGCATGTTAACTCAAGTTTCACGCCAGAGAACTCTAGCACGACAGGTTCATCAGATTCTATAGGGACGACGACAACTCAAGTCTCTCCGGTTTCAGACCTCACAGACTATTACACTACTTTTCAGGCTAATAACAATGATAATATTTATAATACCCAAAGTACCCAGATTAATTATCAGGAATCCCTAACTAGTCCCGTTGGTTACTTTAACCCAGGGTTAGAATTTCATGGTGTTGAGCAGAGCAACGTGGGGTTAGGCAGTGATGACATATGGCCGGATTTATGGAATTTTGACAGCAACAGCTCTGCAATGGTGTTTAGATTTTAG 906 0.4547 MDVSRQGFSSATQSEEEMDLRRGPWTVEEDLVLNNFIAIHGEGRWNSLAQSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAKQLQCDVNSKLFKDTMRYQWMPRLAERIRAAAPPSSGGPTNHYLNNNIPDVTCGQVLPPDDSNYHFGGAHVNSSFTPENSSTTGSSDSIGTTTTQVSPVSDLTDYYTTFQANNNDNIYNTQSTQINYQESLTSPVGYFNPGLEFHGVEQSNVGLGSDDIWPDLWNFDSNSSAMVFRF* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01287 301 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Eupl12g01287 301 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Eupl12g01287 301 Gene3D - 19 75 - -
Eupl12g01287 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Eupl12g01287 301 MobiDBLite consensus disorder prediction 198 219 - -
Eupl12g01287 301 CDD SANT 24 69 IPR001005 -
Eupl12g01287 301 SMART sant 74 122 IPR001005 -
Eupl12g01287 301 SMART sant 21 71 IPR001005 -
Eupl12g01287 301 Gene3D - 79 142 - -
Eupl12g01287 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Eupl12g01287 301 MobiDBLite consensus disorder prediction 1 21 - -
Eupl12g01287 301 FunFam Myb transcription factor 22 74 - -
Eupl12g01287 301 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Eupl12g01287 301 CDD SANT 95 118 IPR001005 -
Eupl12g01287 301 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Eupl12g01287 301 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Eupl12g01287 301 FunFam MYB transcription factor 79 142 - -
Eupl12g01287 301 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 238 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01287 Eupl-Chr12 29569216 29571379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01287 18 167 MYB Transcription Factor Family AT1G48000 76.000 4.39e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl12g01287 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01287 K09422 - nnu:104607058 405.986