Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01260 ATGCCTTCTAGGTCCTTTGATAACCACCATAGAAACCCTAATAATTACAGAAGTGCCTTCTCCCATCAACGCCACCCTTTCAACGGCCCTCCACCAAATCATCCACCCGGCGGTGGCGGTTTTCGACCAATGGGCGGCGGCGGCGGAGGTGGTTTCGGTGGTGGAGGTCACCCGATGCCTCTCTCAGGGCAGAAACGAGGGTTCCCCTTCTCTGGCCGAGGAGGGTCTCCTCCAGATAATACTGACGGTGGCAGTTTTGCGAAACTTTTCGTTGGATCTGTTCCCAGGACAGCTACTGAAGAAGATATTCGGCCCTTGTTTGAGGAACATGGAGATGTTGTTGAGGTTGCTTTGATCAAGGATAAAAGAACTGGCCAGCAACAAGGATGTTGTTTCATAAAGTATGCAACTTCAGAGGAAGCTGACAGGGCCATCAGAGCTTTGCACAATCAATATACTTTGCCCGGGGGAGCGGGTCCCATCCAAGTTAGATATGCTGATGGGGAACGGGAACGTCTCGGTGCAGTTGAATACAAGTTGTTTGTTGGTTCGCTGAACAGACAAGCTACAGAAAAGGAAGTTGAGGAAATCTTTTCTCCTTATGGTCGAGTTGAAGATGTTTACATTATGCGCGATGAACTGAAGCAAAGTCGTGGGTGTGGCTTTGTTAAATTTTCACATAAAGACATGGCAGCAGCAGCTATAAATGCTCTTAATGGAACCTACGTGATGAGAGGATGTGATCAGCCATTAACAGTTCGGTTTGCTGATCCTAAGAGGCCTAGGGCGGGAGAATCCAGGGGTGGTCCTGCATTTGGAGGTCCTGGTTTTGGCCCCCGATCTCAAGCACCATCAGGGGTTAGGCCAGCACCCAATCTCGGTGACTCTATGGGTGGGCGCATTCCACCTAATGCTTGGCATCCAATGAGTCCGCAGAATCTGGGGCCATCTTCTCAATCTAGTGCTCATGGCTTTGGGAGTCATTTGGTTGCTAGGGCTGGTGTTGCACCAATGCCTTCAACTACAGGTGGTACCGTAGGAGTTCATGGTGGCCCCACAAATGGTTCTCTTCCGGGACTTGCAGTTTTACCGTCTTCTACATCGCAGCAGAGTTTCAATCCATCTATGTCACAAGTCCCATCCGTCGGTCAGCAAATATCGCCATTACTGAAGCCACTTCAATCGCCCCAGCAGTTGCTGCCTTCCCTGCAGCTACACCCCCAACAAATGCCGGTGTCTTACACACAGACGCAAACTTCCCAGGCATCGATACAACAATTGGGCCAGCAGCAAATTCCTAATTCCTCTGGTCAACCCACCCTCAGTCAAGCACTGCCATCACAACAATTATATGGTTTGAGTGGACACATGTCCATCTCCCAGCCTCAGGTCCAGCAGAGTGCCTCCTCTGCTACAGCACAACAAATCCCTGTGAACTTACAATCACAAGGTGCGTCTGCCACAGCAAGTCAGCAGCAGCTGTCTGCCCCTGCTGTCCAGCAACAATTGCTTCAGCCTCTACAGCAATCACCCACTCAGTTGGCTCAGATGCTGTCTCAACAGACGCAATCTCTACAGGCGACCTTTCAGTCGTCGCAGCAAGCGTTCTCTCAGCTGCAACAACAGTTGCATTTGATGCAACAATCAAATCAAAATCTTACTCAGCAGCAGAGTTCCCAGGCTACTAAACAGCAGTCTTCATGGACTGGAATGATACCACAGGCAGTTGCCAGCACTCCTGCTACGGTTGCACCTTCAACCACATCATCTGCTCCTTTAAGTACGCAGACAGCAGCTCCTCCAACTTGTAATTGGACGGAGCACACCTCCCCTGAAGGATATAAATACTACTACAACAGTGTAACAAGTGAAAGCAGGTGGGAGAAGCCTGAGGAGTTGACCTTATTTGAGCAACAACAGCAACAGAAACAACAGCAGCAACAAAAGCCTTCAGTTCAACAACTTCAATCCCATACACAAACTCAGTCACAGCCACTGGTTCTGCCCACCCAACAAGTCTCTCAGGCACAACAGATTCAGCTCCAAACACAAATCCGCCATCAGCAGCAATTACAGCTCCAGCAACCTTCTTTATCTTCATCGTACCTGCCTTCTGGTGTAATGGGTCATCAAAACACTCAGGAACAAGGTTATGCACAATTACAGGCATCAGCCACTTCAGGCATTGATCCTGCTCGCTTCCAACAGGTCTCCGACATTAACCTGTTGATGTGTTCAATCTCTTTTGAAGATTTAGCAAATGGTCCTGATTTCAGTTTTTCTTGCCTCTCAACTGTTGTAGGGGCTTCAGGCAGCACAGGAGTGGATGTGGAAGAACAAATCTGCAGGAACTTGACGTGGAAGGGTGGCGGCATCTGA 2379 0.4943 MPSRSFDNHHRNPNNYRSAFSHQRHPFNGPPPNHPPGGGGFRPMGGGGGGGFGGGGHPMPLSGQKRGFPFSGRGGSPPDNTDGGSFAKLFVGSVPRTATEEDIRPLFEEHGDVVEVALIKDKRTGQQQGCCFIKYATSEEADRAIRALHNQYTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNRQATEKEVEEIFSPYGRVEDVYIMRDELKQSRGCGFVKFSHKDMAAAAINALNGTYVMRGCDQPLTVRFADPKRPRAGESRGGPAFGGPGFGPRSQAPSGVRPAPNLGDSMGGRIPPNAWHPMSPQNLGPSSQSSAHGFGSHLVARAGVAPMPSTTGGTVGVHGGPTNGSLPGLAVLPSSTSQQSFNPSMSQVPSVGQQISPLLKPLQSPQQLLPSLQLHPQQMPVSYTQTQTSQASIQQLGQQQIPNSSGQPTLSQALPSQQLYGLSGHMSISQPQVQQSASSATAQQIPVNLQSQGASATASQQQLSAPAVQQQLLQPLQQSPTQLAQMLSQQTQSLQATFQSSQQAFSQLQQQLHLMQQSNQNLTQQQSSQATKQQSSWTGMIPQAVASTPATVAPSTTSSAPLSTQTAAPPTCNWTEHTSPEGYKYYYNSVTSESRWEKPEELTLFEQQQQQKQQQQQKPSVQQLQSHTQTQSQPLVLPTQQVSQAQQIQLQTQIRHQQQLQLQQPSLSSSYLPSGVMGHQNTQEQGYAQLQASATSGIDPARFQQVSDINLLMCSISFEDLANGPDFSFSCLSTVVGASGSTGVDVEEQICRNLTWKGGGI* 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01260 792 FunFam Flowering time control protein FCA 174 264 - -
Eupl12g01260 792 SUPERFAMILY RNA-binding domain, RBD 43 166 IPR035979 GO:0003676
Eupl12g01260 792 Gene3D - 175 265 IPR012677 -
Eupl12g01260 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 258 IPR000504 GO:0003723
Eupl12g01260 792 MobiDBLite consensus disorder prediction 636 663 - -
Eupl12g01260 792 MobiDBLite consensus disorder prediction 1 88 - -
Eupl12g01260 792 Gene3D - 586 655 - -
Eupl12g01260 792 MobiDBLite consensus disorder prediction 310 324 - -
Eupl12g01260 792 PANTHER RNA BINDING PROTEIN 35 656 - -
Eupl12g01260 792 MobiDBLite consensus disorder prediction 257 324 - -
Eupl12g01260 792 SUPERFAMILY WW domain 604 637 IPR036020 GO:0005515
Eupl12g01260 792 SMART ww_5 600 632 IPR001202 GO:0005515
Eupl12g01260 792 ProSitePatterns WW/rsp5/WWP domain signature. 605 630 IPR001202 GO:0005515
Eupl12g01260 792 SMART rrm1_1 88 164 IPR000504 GO:0003723
Eupl12g01260 792 SMART rrm1_1 179 254 IPR000504 GO:0003723
Eupl12g01260 792 SUPERFAMILY RNA-binding domain, RBD 178 281 IPR035979 GO:0003676
Eupl12g01260 792 Coils Coil 536 556 - -
Eupl12g01260 792 MobiDBLite consensus disorder prediction 1 22 - -
Eupl12g01260 792 MobiDBLite consensus disorder prediction 579 610 - -
Eupl12g01260 792 FunFam flowering time control protein FCA isoform X2 81 173 - -
Eupl12g01260 792 PRINTS Paraneoplastic encephalomyelitis antigen family signature 183 198 IPR002343 GO:0003723|GO:1990904
Eupl12g01260 792 PRINTS Paraneoplastic encephalomyelitis antigen family signature 239 256 IPR002343 GO:0003723|GO:1990904
Eupl12g01260 792 PRINTS Paraneoplastic encephalomyelitis antigen family signature 198 210 IPR002343 GO:0003723|GO:1990904
Eupl12g01260 792 PRINTS Paraneoplastic encephalomyelitis antigen family signature 87 102 IPR002343 GO:0003723|GO:1990904
Eupl12g01260 792 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 168 IPR000504 GO:0003723
Eupl12g01260 792 Pfam WW domain 604 630 IPR001202 GO:0005515
Eupl12g01260 792 CDD WW 603 632 IPR001202 GO:0005515
Eupl12g01260 792 ProSiteProfiles WW/rsp5/WWP domain profile. 599 632 IPR001202 GO:0005515
Eupl12g01260 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 153 IPR000504 GO:0003723
Eupl12g01260 792 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 244 IPR000504 GO:0003723
Eupl12g01260 792 Gene3D - 79 174 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01260 Eupl-Chr12 29245496 29268318 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01260 86 280 Eukaryotic Initiation Factors Gene Family AT4G34110 27.230 5.22e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01260 - - nnu:104605043 792.727