LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl12g01257	ATGGAGAAGAAAGAAGAAATGGAGAGGGAGAGGGAGAATTCGATAGGATCTTCGACATTTTCAGATCAGATTCCGACCAATTATCCTCTATCAGGCATGTTCGACATGTCGTGTGAAGTTGAAAAAGGCTCTCTAGGTTTCATGGACTTACTGGGTATGCAAGATTACAATCCTACGATATTCGATTTGCTACAACAACCATCGGCACCACCACCGCCACCACCACTTCCGGAGACATCTGAGGTGTTGAATTTGCCTGCGACACCCAACTCTTCGTCGATTTCGTCGTCGTCGACTGAAGCTGCTAACGATGAACAAGCTAAAGCAATAGATGAGGAAGAGCAGGAAAAGACCAAGAAACAATCGAAACCCAAAAAGAAGAACCAAAAACGGCAGAGAGAGCCGAGATTTGCGTTCATGACAAAGAGTGAGGTTGATCATCTGGAAGACGGGTACAGATGGAGAAAGTACGGACAAAAAGCTGTGAAAAATAGCCCTTTTCCGAGGAGCTACTATCGTTGCACCAGTGCGACGTGCTGTGTGAAGAAGCGAGTTGAACGATCTTCGGAAGATCCGACCATCGTTGTGACAACGTACGAAGGCCAGCACACCCATTCGAGCCCGGTTATGCCACGCGGAAGCTCTGCGGGGTTTTCGACAGATTCCGGCAGCTTTGCGGCCGCTGCTGCCGCCTTCGCCATGCCGATGCAAATGACACAATATCAACAACAACGGCAACAACCCTATTTCCATAGCTTACAACCTTCTTTGAATTTCAATTCTGCTTCTTCTTCACCTTCACCTTCACCTACTACTTTTCTTCAAGAGAGACGTTTTTGCACTTCTTTACTTAGAGATCATGGGCTTCTCCAAGACATAGTTCCGTCGGATATGCGGAAGGAGTAG	906	0.4724	MEKKEEMERERENSIGSSTFSDQIPTNYPLSGMFDMSCEVEKGSLGFMDLLGMQDYNPTIFDLLQQPSAPPPPPPLPETSEVLNLPATPNSSSISSSSTEAANDEQAKAIDEEEQEKTKKQSKPKKKNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSATCCVKKRVERSSEDPTIVVTTYEGQHTHSSPVMPRGSSAGFSTDSGSFAAAAAAFAMPMQMTQYQQQRQQPYFHSLQPSLNFNSASSSPSPSPTTFLQERRFCTSLLRDHGLLQDIVPSDMRKE*	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl12g01257	301	ProSiteProfiles	WRKY domain profile.	143	208	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g01257	301	MobiDBLite	consensus disorder prediction	105	121	-	-
	Eupl12g01257	301	MobiDBLite	consensus disorder prediction	1	15	-	-
	Eupl12g01257	301	Pfam	WRKY DNA -binding domain	149	205	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g01257	301	PIRSF	WRKY_txn_fact_IIc	1	301	IPR017396	GO:0003700
	Eupl12g01257	301	MobiDBLite	consensus disorder prediction	83	104	-	-
	Eupl12g01257	301	Coils	Coil	103	123	-	-
	Eupl12g01257	301	MobiDBLite	consensus disorder prediction	1	26	-	-
	Eupl12g01257	301	MobiDBLite	consensus disorder prediction	65	80	-	-
	Eupl12g01257	301	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	86	246	IPR044810	GO:0003700
	Eupl12g01257	301	MobiDBLite	consensus disorder prediction	62	137	-	-
	Eupl12g01257	301	Gene3D	WRKY domain	133	209	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g01257	301	SUPERFAMILY	WRKY DNA-binding domain	140	208	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g01257	301	SMART	WRKY_cls	148	207	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Eupl12g01257	301	FunFam	WRKY transcription factor 57	134	208	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl12g01257	Eupl-Chr12	29237848	29243101	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl12g01257	41	301	WRKY Transcription Factor Family	AT2G47260	47.403	3.51e-63	201

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Eupl12g01257		WRKY	2.6e-26	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl12g01257	-		-	nnu:104605040	367.466