Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01251 ATGGCTTCTGGTTCAGAAGAGGGGTTAGGATTTGGGACCGAAGATTTCGATCCATCGATCACGGCAACGACGGACGTTGAGCTCTTGAAGAGGGCATGGCGAAACGAAAAGGCGGCTCCGGAAATTCTTCAGTTTCAGGCCGGTTTAGTTCAGAGATCGAGAGAACAGATCCAATTGATGGAAGATACCGTGGAGGAATATGGGGGAAACAGCACGGACCCACTCACTGTATCCCTTTACCAGATGGACTTGGACCGGACTCAGTTTCTCTTGAGATCGTATCTTCGAACTCGTCTCCAAAAGATTGAGAAGTATATGATCCACATTTCAAAAACTGAAATGTGGGACCGACTTTCTGAACAAGAACAGAAGTTTGCTAAGAGGTGTACTGATCACTTGGAAAAGCATCTCCAACAATCTGTTCTGTTACGGTTGCCTTATGGTTATCAGTCCATTCTGAAGCAATCCATATCAAGCGAAGAGGATGACATGGTTCCAGAGCCTCAGTTGGACACATTTGTCTTCTGCAAGAGCAAGGGATCTCTTGGAGCATTCCAGCTGGATGACAGTGGAGATGAGATTGTGGACCTAGTTGCAGATGATCTGTATGTCCTACGTTACAAGTCAATAAAGGCACTGGTAGAGAGCGGGCAAATTGACATCGTCTGA 669 0.4634 MASGSEEGLGFGTEDFDPSITATTDVELLKRAWRNEKAAPEILQFQAGLVQRSREQIQLMEDTVEEYGGNSTDPLTVSLYQMDLDRTQFLLRSYLRTRLQKIEKYMIHISKTEMWDRLSEQEQKFAKRCTDHLEKHLQQSVLLRLPYGYQSILKQSISSEEDDMVPEPQLDTFVFCKSKGSLGAFQLDDSGDEIVDLVADDLYVLRYKSIKALVESGQIDIV* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01251 222 CDD GINS_B_Sld5 168 222 IPR031633 -
Eupl12g01251 222 Pfam GINS complex protein 50 122 IPR021151 -
Eupl12g01251 222 CDD GINS_A_Sld5 25 142 IPR038749 -
Eupl12g01251 222 SUPERFAMILY GINS helical bundle-like 20 153 IPR036224 -
Eupl12g01251 222 PIRSF GINS_Sld5 6 222 IPR008591 GO:0006261
Eupl12g01251 222 FunFam DNA replication complex GINS protein SLD5 12 212 - -
Eupl12g01251 222 PANTHER SLD5 PROTEIN 18 222 IPR008591 GO:0006261
Eupl12g01251 222 SUPERFAMILY PriA/YqbF domain 170 222 - -
Eupl12g01251 222 Gene3D - 13 212 - -
Eupl12g01251 222 Pfam DNA replication complex GINS protein SLD5 C-terminus 168 221 IPR031633 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01251 Eupl-Chr12 29092315 29099682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01251 1 164 Core DNA Replication Machinery Family AT5G49010 62.424 5.17e-68 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01251 K10735 - ming:122090932 379.407