Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01240 ATGATTTTCTCTATATTTTTTGGTGGGGTGATCAGGGCTGAAGATAACGGTGCCAACAGTTTTGTTAAAGCTAAAATATCACGTAACCTCATCGTGGATAAATTGGGTCATGGAGATTTCCGCAGTGTTCAACAAGCCATCGATTCCGTTCCCCCGAACAATAACAAGTGGATCCGTATTTTTGTTAAACCTGGACGTTACATGGAAAAGGTTACGATCCCGAAGGACAAACCCTTCATCGTCCTCGAAGGGAGCGGGAGGACCATAACGAAGATTGCTTGGGATGGACACAATGGAATGGCGACGAGCTCTACGTTCTGTGTGAATGCGGAGAACTTCGTCGCCAAAAAGATAAGTTTCATGAATACGTATAACCATGTTCCGAGAAATGTGTATAATGAATCAAGGACAAATGAACGGCCACGCACACAAGCAGTCGCAGCGGAGATATTTGCTGACAAGTCGTCGTTCTATGAATGTGGTTTCTTCGGCTTGCAGGATACACTGTTTGATGATCAAGGACGGCATTACTTCTACGAATGCTATATCGAAGGTGCGGTTGATTTCATTTTTGGCCAAGGCCAGTCCATTTACGAGAAATGTGCAATATCAGTTATAGCGGGAAATTTACAAGAATACAAGGGATTAACGGGTTTTATAACGGCACAAAACAGGCAGAAACGTAGCGACACAAATGGGTTTGTGTTTAAACACTGTCGTGTGTTTGGTAATGGCACGGTGTATCTTGGGAGACCATGGGGACCTTTTGCTCGTGTGCTCTTCTACTTCACATATATGTCAAATGTCGTCGTTCCCAAGGGATGGCAACATTGGTCCCGTTTAGAACACAGATCAATGCGGTTTCATCAATCACTTCTCTTCGTATATCTGGCTCTTTCTATGGCTTTTGCTTTGGTGATCGGCGAATCAGAGACGGGATTAACCATCAAACGATTTAAACACAGACCTATGAAGACCATCACCGTTGATCAGTGGGGCCATGGAGATTTCTTCACCATTCAATCGGCTATCGATTCCGTGCCTTCAAACAATAGAAAATGGATCCGTATTCACGTAAACCGCGGCATCTATAAGGAGAAGGTTATTATCCCTTGCGATAAGCCTTACATTGTGCTCGAAGGCGATGGGAAGAGAAAAACAGCGATTGTTTGGGATGACCATGAAACGGCGGAACAAAGCCCGACTTTCAGCTTGTTAGCGGATAATTTTGTTGCTAGATATATAAGCTTCAAGAACACATACAACCTTCAAGCCTCGATGAATGTTAATCCTCGGCTCCCGGCAGTGGCAGCTCTTGTAGCAGGTGATAAGGCTTCATTTTATGGATGCGGTTTCTATGGATTGCAAGATACATTGTGGGATGCACAAGGTCGCCATTATTTCAGGTCTTGCCATATCGAGGGAGCCGTCGATTTCATCTTCGGCATGGGTCAGTCCATTTACGAGAAATGTGCGATATCGGTTATCGCTGACGATGTATACCCGTACGTGGGTTTCATAACAGCTCAGGGTAGAAACAACCCGACAGATACAAATGGGTTTGTGTTCAAACACGGCAAGGTGTTTGGGAAGGGCATGGCCTACCTGGGAAGAGCCTGGAGAAGTCATTCAAGGGTGTTGTTCTACAAAACTTCTTTATCAAACGTCGTTGTTCCTCAGGGATGGGATGCCTGGAACTTCATCGGCGGCGAAGAACACATAACTTATGCGGAGCTTAATTGCCATGGAATGGGATCGAACACTTCGGAGCGAGTGGATTGGGAAAAGAAACTTAATTACAACGTGGTGTCGGAGTTGGTTAGTATGAGTTTCATCGACGATGAAGGATGGCTTAGACGACAACCCTAA 1869 0.45 MIFSIFFGGVIRAEDNGANSFVKAKISRNLIVDKLGHGDFRSVQQAIDSVPPNNNKWIRIFVKPGRYMEKVTIPKDKPFIVLEGSGRTITKIAWDGHNGMATSSTFCVNAENFVAKKISFMNTYNHVPRNVYNESRTNERPRTQAVAAEIFADKSSFYECGFFGLQDTLFDDQGRHYFYECYIEGAVDFIFGQGQSIYEKCAISVIAGNLQEYKGLTGFITAQNRQKRSDTNGFVFKHCRVFGNGTVYLGRPWGPFARVLFYFTYMSNVVVPKGWQHWSRLEHRSMRFHQSLLFVYLALSMAFALVIGESETGLTIKRFKHRPMKTITVDQWGHGDFFTIQSAIDSVPSNNRKWIRIHVNRGIYKEKVIIPCDKPYIVLEGDGKRKTAIVWDDHETAEQSPTFSLLADNFVARYISFKNTYNLQASMNVNPRLPAVAALVAGDKASFYGCGFYGLQDTLWDAQGRHYFRSCHIEGAVDFIFGMGQSIYEKCAISVIADDVYPYVGFITAQGRNNPTDTNGFVFKHGKVFGKGMAYLGRAWRSHSRVLFYKTSLSNVVVPQGWDAWNFIGGEEHITYAELNCHGMGSNTSERVDWEKKLNYNVVSELVSMSFIDDEGWLRRQP* 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01240 622 ProSitePatterns Pectinesterase signature 2. 473 482 IPR033131 -
Eupl12g01240 622 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Eupl12g01240 622 SUPERFAMILY Pectin lyase-like 27 279 IPR011050 -
Eupl12g01240 622 ProSitePatterns Pectinesterase signature 1. 54 73 IPR018040 -
Eupl12g01240 622 FunFam Pectinesterase 321 622 - -
Eupl12g01240 622 SUPERFAMILY Pectin lyase-like 325 619 IPR011050 -
Eupl12g01240 622 Gene3D - 321 621 IPR012334 -
Eupl12g01240 622 Gene3D - 23 292 IPR012334 -
Eupl12g01240 622 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 318 619 - -
Eupl12g01240 622 Pfam Pectinesterase 327 612 IPR000070 GO:0030599|GO:0042545
Eupl12g01240 622 Pfam Pectinesterase 30 280 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01240 Eupl-Chr12 29000059 29016164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01240 325 571 Carbohydrate Esterase AT2G19150 48.400 3.78e-72 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01240 - - cave:132169169 498.819