Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01238 ATGTCGTTTTTGTCGCCTGTTCGAACATTCCATGTCGTTTTTGCTGTGAGCTTTGTGCTCTCGGTTTTGGTCTCGGATGTTGCCCATGGGTTAACTGCACATACCGTCATCGACTCTCCGTTGTTAACGGAAAAGATCGGCACCAACCGTACGATTAAGGTTGATATCAACGGTGACGGGGACTTCAGGTCCATTCAAGACGCCGTCGATTCTGTTCCAGAAGGGAATTCTCAATGGATCATCATTCATGCTAGGAAAGGAGTGTACAGAGAAAAGATTCACATTCCAGAGAAAAAGCCATACATATTTTTGAGAGGAAATGGGAAGGGGAGAACGCGCGTGGTGTGGGACCATAGCTCCACCGACAATAGCGAGTCTGCCACTCTCAGAGTCGAAGCCTCCAACTTCATTGCCTTTGGTGTCACCTTCAAGAACGACGCAAACATAGGGCTACCCTACACATCAAACAATGTATCGGTGGCAGCATTCGTTGCTGCAGATAAAGTAGCATTCTACCACTGTGGATTCTACAGTGCCCATAACACCCTCTTTGATTATAGGGGCAGGCATTATTATGATAATTGCTACATCCAGGGCACCATCGATTTCATCTTCGGCCGCGGCCAATCCATTTTCCAAAGCTGTGAGATATTCGACGTTGGTGATAAACGAGTAGCGATCCGTGGGTCCATCACAGCTCAAAATAGGCAAAGTGCAGATGAGAAGAGCGGTTTCGTGTTCATAAAAGGAAAGGTTTACGGAATTGGTGGGGTATACTTAGGCAGAGCAAAGGGTGCCCATTCAAGGGTAATATTCGCCAAGGTCTATCTCTCCAAGACCATCGTCCCAGAGGCGTGGACGAAATGGAGCTACACTGGCACCACACAACATCTATTTCATGCGGAGTACGATTGCCATGGACCCGGTTCAAAGACATTGGATCGCGCTCCCTGGTCTCAACAACTAACTGAAAAAGAAGTTGCTCCATTCATGTCTATAGATTTCATCGGTGGGAAGGAATGGTTACCTGTTTATAATATAGATCTTTAA 1050 0.4667 MSFLSPVRTFHVVFAVSFVLSVLVSDVAHGLTAHTVIDSPLLTEKIGTNRTIKVDINGDGDFRSIQDAVDSVPEGNSQWIIIHARKGVYREKIHIPEKKPYIFLRGNGKGRTRVVWDHSSTDNSESATLRVEASNFIAFGVTFKNDANIGLPYTSNNVSVAAFVAADKVAFYHCGFYSAHNTLFDYRGRHYYDNCYIQGTIDFIFGRGQSIFQSCEIFDVGDKRVAIRGSITAQNRQSADEKSGFVFIKGKVYGIGGVYLGRAKGAHSRVIFAKVYLSKTIVPEAWTKWSYTGTTQHLFHAEYDCHGPGSKTLDRAPWSQQLTEKEVAPFMSIDFIGGKEWLPVYNIDL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01238 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 45 342 - -
Eupl12g01238 349 Pfam Pectinesterase 53 338 IPR000070 GO:0030599|GO:0042545
Eupl12g01238 349 SUPERFAMILY Pectin lyase-like 48 348 IPR011050 -
Eupl12g01238 349 FunFam Pectinesterase 46 346 - -
Eupl12g01238 349 ProSitePatterns Pectinesterase signature 2. 197 206 IPR033131 -
Eupl12g01238 349 Gene3D - 46 349 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01238 Eupl-Chr12 28989461 28992850 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01238 40 342 Carbohydrate Esterase AT1G05310 39.032 7.96e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01238 - - nnu:104605165 532.332