Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01235 ATGGCTTCTGGAAGTAAAGCAACCTACGGCCACTCCTCTGGTGCAAACAACATCAGAGCACCCCACCAAGCAGACTCCGTGAACAAAGCTATTGCTCAGTACACCGTCGACGCCCGCCTCCACGCCGTCTACGAACAGTCAGGCGAGACTGGTAAGTCTTTCGACTACTCCCAATCAATTAGAACAACAACACAATCCGTCCCCGAACAACAAATCACTGCATACTTGTCCAAAATTCAACGCGGCGGCCATGTCCAGCCTTTTGGCTGTATGATCGCCGTCGAAGAAACCACCTTCCGAGTCATCGCCTACAGTGAAAACGCTACCGAAATCCTCGACCTTACCCCACAATCTGTACCCAGTCTCGAGAAACCCGAGATTCTGACCGTCGGTACCGATGTACGGACGCTTTTCACTCCGTCGAGCTCAATTCTGCTCGAAAAAGCCGTTGGTGCTCGCGAAATTACGTTATTGAACCCTGTTTGGATCCATTCCAAGAATTCGGGGAAACCCTTTTACGCGATCTTGCATAGGATTGATGTCGGAATTGTAATTGATTTGGAGCCAGCAAGGACAGAGGACCCTGCCTTGTCAATTGCCGGGGCCGTGCAGTCACAGAAGCTCGCTGTCCGTGCAATTTCACGCTTGCAATCGCTCCCTGGTGGGGATATTAAGCTTCTGTGTGATACAGTGGTTGATCATGTCCGGGAGCTTACCGGGTATGACCGGGTTATGGTTTACAAGTTTCATGAGGATGAGCATGGTGAGGTTGTGGCTGAAAGCAAGCAGCCCAATTTGGAGCCGTATATTGGTCTACACTATCCTGCCACTGACATACCCCAGGCTTCGAGGTTCTTGTTCAAACAGAACCGGGTTAGGATGATTGTTGATTGCCATGCCACACCTGTTCGGGTAATTCAGGATGAAGCGCTTATGCAGCCCCTATGCTTAGTTGGTTCAACACTACGGGCCCCACATGGTTGTCATGCCCAGTACATGGTCAATATGGGCTCGATTGCCTCTTTAGCGATGGCAGTAATCATCAATGGGAATGATGAGGAGGGTACCAGTGGGCGTAACTCGATGAGGCTTTGGGGCCTTGTCGTTTGCCACCATACATCGGCACGGTGCATCCCATTCCCCCTCCGTTATGCATGTGAGTTTCTCATGCAGGCCTTCGGGCTTCAATTGAACATGGAATTGCAATTGGCATCCCAACTGTCAGAAAAACACGTTCTACGAACCCAGACTCTCTTGTGTGACATGCTCCTCCGGGAGTCCCCATCTGGGATTGTCACCCAGAATCCCAGTATCATGGATCTTGTGAAGTGTGATGGGACTGCGCTCTACTACCAAGGGAAGTACTACCCACTTGGTGTCACCCCGACTGAAGCCCAGATAAAGGATATTGTGGAGTGGTTGTTGGCTTACCATGGGGACTCAACGGGGTTGAGCACAGACAGCTTGGCTGATGCTGGGTACCCCGGAGCAGCCTTGCTTGGTGACGCAGTTTGTGGGATGGCTGTGGCTTATATCACCTCAAGGGATTTCTTGTTCTGGTTCCGGTCCCACACAGGGAAAGAGATAAAGTGGGGAGGGGCAAAGCATCACCCAGAGGATAAGGACGATGGGCAAAGGATGCACCCACGTTCTTCATTTAAGGCGTTCTTGGAAGTAGTTAAGAGTAGGAGCTTGCCGTGGGAGAATGCGGAGATGGATGCAATCCACTCCTTGCAGCTTATATTGCGGGACTCGTTTCGGGAGGCTGAGGGAAGCAATTCTAAGGCTGTGATCAATGCCGAGATTGGGAATCTAGAGTTGCAGGGGGTGGACGAGCTCAGCTCAGTTGCAAGAGAGATGGTGAGGCTCATAGAGACTGCAACAGCTCCTATTTTTGCCGTGGATTCTGATGGGCGGATTAATGGGTGGAATGCAAAGGTTGCGGAGTTGACAGGGCTCTCAGTCGAGGAAGCTATGGGGAAGTCGCTAGTTCATGACCTTGTTTATAAGGAATCTGCAGAAATTGTTGACAAGCTTCTTTACCGTGCTCTAAGAGGTGAAGAGGATAAGAATGTAGAGATAAAGCTGAGGACATTTGGTCCTCAACAACTTAAGAAAGCCGTCTTTGTGGTGGTCAATGCCTGCTCTAGCAAGGATTATACAGACAACATTGTCGGGGTGTGCTTTGTGGGTCAGGACGTTACTGGTCAGAAAGTGGTAATGGACAAGTTCATCCACATACAAGGTGATTACAAGGCTATTGTACAGAATCCTAACCCTTTGATCCCACCTATATTTGCTTCGGATGAGAATACTTGTTGCTCGGAGTGGAATACTGCCATGGAAAATCTCACTGGATGGGCCAGAGGGGATATAATGGGGAAGATGTTGGTGGGGGAGGTTTTTGGCGGATGCTGTCGGCTCAAGGGCCCTGATGCTCTGACAAAATTCATGATTGTCTTGCACAATGCAGTTGGAGGGCTTGATACTGACAAGTTCCCATTCGCGTTCTTTAACCGGAAAGGAAAATATATGCAAGCTCTCTTGACGGCAAATAGAAGAGTTAATATGGAGGGCCAAATTATTGGGGCCTTCTGTTTCTTGCAGATTGCAAGCCCTGAATTGCAGCAAGCTTTGGAAATCCAGAGGCAGCAAGAAAAGAAATGCTTTGCTAGGATGAAAGAGTTGGCCTACATTTGTCAGGAGATAAAGAATCCTTTAAGTGGGATACGGTTTACTAACTCACTCTTGGAGACTACGGACTTAACTGAAGACCAGAAGCAGTTCCTTGAGACTAGTGCTGCTTGTGAGAGGCAGATGATGATGATTATAAAGGATGTTAATCTGGAGAGCATAGAAGATGGGTCCTTGGAGCTCGAGAAGGCTGAATTTTTACTGGAGAGTGTTATAAATGCTGTCGTTAGCCAAGTTATGATCCTACTGAGGGAAAGAGGTTTACAATTGATCCGAGATATTCCAGAGGAAATTAAAACGCTGGCTGTTTATGGTGATCAAGTTAGGATTCAACAGGTCTTGGCTGATTTCTTGTTGAATATGGTGAGATATGCACCATCTCCAGAAGGTTGGGTAGAGATTCATGTTCGACCAAATTTGAAGCAGATCTCGGATGGGATTGAGCTTGTGCATCTTGAATTCAGGATGGTATGCCCCGGCGAAGGCCTTCCCCCGGAACTTGTTCAAGATATGTTCCATAGCAGCAGGTGGGTGACTCAAGAAGGCCTAGGGCTGAGCATGTGCAGAAAGATTTTAAAGCTGATGAATGGCGAAGTTCAATATATCAGGGAGTCCGAAAGATGTTATTTCCTCATCATCCTTGAACTTCCCACGCCTCAGAGAGGCTCAAAGAGTGAGGACTAG 3378 0.4852 MASGSKATYGHSSGANNIRAPHQADSVNKAIAQYTVDARLHAVYEQSGETGKSFDYSQSIRTTTQSVPEQQITAYLSKIQRGGHVQPFGCMIAVEETTFRVIAYSENATEILDLTPQSVPSLEKPEILTVGTDVRTLFTPSSSILLEKAVGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISRLQSLPGGDIKLLCDTVVDHVRELTGYDRVMVYKFHEDEHGEVVAESKQPNLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVIQDEALMQPLCLVGSTLRAPHGCHAQYMVNMGSIASLAMAVIINGNDEEGTSGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRESPSGIVTQNPSIMDLVKCDGTALYYQGKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITSRDFLFWFRSHTGKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFREAEGSNSKAVINAEIGNLELQGVDELSSVAREMVRLIETATAPIFAVDSDGRINGWNAKVAELTGLSVEEAMGKSLVHDLVYKESAEIVDKLLYRALRGEEDKNVEIKLRTFGPQQLKKAVFVVVNACSSKDYTDNIVGVCFVGQDVTGQKVVMDKFIHIQGDYKAIVQNPNPLIPPIFASDENTCCSEWNTAMENLTGWARGDIMGKMLVGEVFGGCCRLKGPDALTKFMIVLHNAVGGLDTDKFPFAFFNRKGKYMQALLTANRRVNMEGQIIGAFCFLQIASPELQQALEIQRQQEKKCFARMKELAYICQEIKNPLSGIRFTNSLLETTDLTEDQKQFLETSAACERQMMMIIKDVNLESIEDGSLELEKAEFLLESVINAVVSQVMILLRERGLQLIRDIPEEIKTLAVYGDQVRIQQVLADFLLNMVRYAPSPEGWVEIHVRPNLKQISDGIELVHLEFRMVCPGEGLPPELVQDMFHSSRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLIILELPTPQRGSKSED* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01235 1125 Gene3D - 204 562 IPR029016 -
Eupl12g01235 1125 CDD HisKA 891 947 IPR003661 GO:0000155|GO:0007165
Eupl12g01235 1125 NCBIfam PAS domain S-box protein 623 738 IPR000014 -
Eupl12g01235 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 867 IPR035965 -
Eupl12g01235 1125 CDD PAS 627 734 IPR000014 -
Eupl12g01235 1125 Pfam PAS fold 74 190 IPR013654 GO:0006355
Eupl12g01235 1125 Gene3D - 954 1118 IPR036890 -
Eupl12g01235 1125 Gene3D - 872 953 - -
Eupl12g01235 1125 Gene3D PAS domain 611 745 - -
Eupl12g01235 1125 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
Eupl12g01235 1125 Gene3D PAS domain 78 326 - -
Eupl12g01235 1125 FunFam Phytochrome 872 953 - -
Eupl12g01235 1125 CDD HATPase_Phy-like 1002 1114 IPR044767 -
Eupl12g01235 1125 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 223 391 IPR016132 -
Eupl12g01235 1125 PIRSF Phytochrome_conventional 5 1123 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Eupl12g01235 1125 FunFam Phytochrome 954 1120 - -
Eupl12g01235 1125 Pfam PAS fold 619 734 IPR013767 GO:0006355
Eupl12g01235 1125 Pfam PAS fold 750 869 IPR013767 GO:0006355
Eupl12g01235 1125 ProSitePatterns Phytochrome chromophore attachment site signature. 323 332 IPR013516 -
Eupl12g01235 1125 Gene3D PAS domain 763 871 - -
Eupl12g01235 1125 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1111 IPR003594 -
Eupl12g01235 1125 ProSiteProfiles Histidine kinase domain profile. 898 1118 IPR005467 -
Eupl12g01235 1125 PANTHER OS08G0260000 PROTEIN 70 953 - -
Eupl12g01235 1125 SUPERFAMILY GAF domain-like 409 587 - -
Eupl12g01235 1125 CDD PAS 761 869 IPR000014 -
Eupl12g01235 1125 ProSiteProfiles PAS repeat profile. 616 687 IPR000014 -
Eupl12g01235 1125 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 881 947 IPR036097 GO:0000155|GO:0007165
Eupl12g01235 1125 FunFam Phytochrome 612 744 - -
Eupl12g01235 1125 FunFam Phytochrome 406 536 - -
Eupl12g01235 1125 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 966 1112 IPR036890 -
Eupl12g01235 1125 Pfam GAF domain 223 401 IPR003018 GO:0005515
Eupl12g01235 1125 PRINTS Phytochrome signature 138 160 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 238 257 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 323 344 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Eupl12g01235 1125 SMART pas_2 618 685 IPR000014 -
Eupl12g01235 1125 SMART pas_2 749 819 IPR000014 -
Eupl12g01235 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 730 IPR035965 -
Eupl12g01235 1125 SMART HKATPase_4 1003 1116 IPR003594 -
Eupl12g01235 1125 SMART HisKA_10 891 955 IPR003661 GO:0000155|GO:0007165
Eupl12g01235 1125 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Eupl12g01235 1125 SUPERFAMILY GAF domain-like 203 398 - -
Eupl12g01235 1125 SMART gaf_1 223 411 IPR003018 GO:0005515
Eupl12g01235 1125 Pfam His Kinase A (phospho-acceptor) domain 895 955 IPR003661 GO:0000155|GO:0007165
Eupl12g01235 1125 Gene3D - 406 579 IPR043150 -
Eupl12g01235 1125 FunFam Phytochrome 763 871 - -
Eupl12g01235 1125 SUPERFAMILY PYP-like sensor domain (PAS domain) 79 193 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01235 Eupl-Chr12 28951038 28959484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01235 5 1117 Histidine Kinase Gene Family AT4G16250 75.177 0.0 1779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01235 K12121 - ming:122091358 2040