Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01225 ATGTCGAAGAGGAAATTCGGCTTCGAAGGGTTCGGAATCAACAGACCAGCAACCTACAGTTTCGAGCGGTCCGAAGCTCCGCAGAGATTATACGTTCCTCCATCATCGCGTACTGGCAGCAGTCACGATAACTATGAAGATCACGACCTTGACAACATTGATTACGATGACAGAGAAGGGAGCGTCGATGCTCTGAAGGAATCCAACGGTGGTGATGATGGAGAGATTGACCCGCTCGATGCGTTCATGGAGGGAATTCATGAAGAGATGAAGGCCCCACCACCTTCAAAGGCAAAGGAGAAGGCGGAAAAGTACAGGGATGACGAAGAGGATGATCCGGTTGAGAGCTTCTTGAGGGCGAAGAAAGATATTGGGTTGACTCTGGCTTCCGAGGTTCTTCAGGCTGGGTATGATTCTGATGAGGAAGTTTATGCGGCAGCAAAGGCCGTCGATGCGGGGCTGATTGAGTATGATTCAGATGATAATCCAGTGGTGCTTGATAAGAAGAAGATCGAACCAATTCCAGCCTTGGATCACAGTTCTATTGATTATGAGCCATTTAACAAGGATTTTTATGAAGAACAAGCTTCCATTTCAGGAATGAGTGAGCAGGATGTTGCCGAGTATCGGAAAAGTTTGGCTATACGTGTTTCAGGTTTTGATGTACCCAGGCCAATTAGGATGTTTGAGGATTGTGGATTTTCTCCCCAACTAATGAGTGCTATCACTAAACAAGGGTATGCGAAGCCAACACCAATTCAGTGCCAAGCTTTACCAATTGTGCTTTCAGGGAGAGATATCATTGGTATTGCAAAGACTGGTTCTGGCAAAACTGCTGCCTTTGTTCTTCCTATGATTGTTCATATTATGGATCAACCTGAACTTGAGAAAGAAGAGGGTCCAATAGGAGTAATATGTGCACCTACTAGAGAATTAGCTCATCAAATATATTTGGAGGCAAAGAAGTTTGCAAAATCTCATGGGATACGTGTCTCTGCAGTTTATGGTGGAATGTCTAAACTTGATCAATTTAAAGAGCTGAAGGCAGGTTGTGAGATAGTTGTAGCTACTCCTGGGAGATTGATAGACATGCTAAAGATGAAGGCACTGACCATGTTGAGAGCAACTTACCTAGTTCTTGATGAAGCTGATCGGATGTTTGACCTCGGTTTCGAGCCACAAATAAGGTCTATTTTTGGTCAGATAAGACCAGACCGTCAGACCTTACTCTTTTCGGCGACCATGCCCGGCAAAGTTGAAAAGTTAGCTAGGGAAAATCTCACTGATCCTGTAAGAGTTACGGTGGGTGAGGTGGGAATGGCCAATGAGGACATTACTCAAGTTGTTCATGTAGTTCCTTCTAATGCTGAAAAGATGCCGTGGCTTCTCGAGAAGCTTCCTGGAATGATTGATAATGGAGATGTTCTAGTGTTTGCTTCAAAAAAAGCTACAGTGGATGAGATTGAATCCCAGTTGGTTCAAAACGGGTTCAAAGTTGCAGCTCTCCATGGTGACAAAGACCAGGCCTCTCGAATGGAAATTTTGCAAAAGTTTAAATCTGGGACATACCACGTTCTCATTGCAACTGATGTTGCTGCTCGTGGACTTGACATCAAGTCAATTAAGTCAGTTGTGAACTTTGATATTGCCAGAGATATGGACATGCATGTTCATCGTATTGGTAGAACTGGTCGTGCTGGAGACAAGGATGGGACGGCGTACACTCTTGTCACACTGAAAGAGGCACGCTTTGCTGGTGAATTGGTCAACAGTTTGATTGCTGCTGGTCAGAATGTGTCTATGGAACTGATGGATCTTGCTATGAAGGATGGGAGATTCAGGTCCAAACGTGATGCAAGAAAAGGATCTGGTGGGAAAAAAGCTAGAGGGAGGGGAAAGGGAGGTGGTGGTGGTGGCAGTGGGCGAGGTGTGCGCGGCGTTGATTTTGGCCTGGGTATTGGTTATAATCCAGAATCGGTAAACACACCAATTCAGTCTGCTCCAAGTCGATCAGCTGCTGTGAATGCACTAAGGACAGGAATGATGGCACAGTTCAAGAGCAACTTTGTAGCTGCAACACCTGATTCTCAAAGTCAGGCCAGAAATAACAACTCAAGCACATTTGCCAGCATGAGGCCAGTGTTAGCTGGTTTCGTTTCTGGTGGTTCAATTGGTGGAGACACAAATAGAGCACAAACAGCTAGTTCATTCAATCCTGCTCCTACGTCAGGAGGAAACACCACTGGTGAGAACTCCAGAGAGAATGGAACTCAGAAGAACTCTGAAAGTTCTAGAGATAGACCAAGAGAAAGGCGGAGGCCTTCTGGTTGGGATCGTTAA 2340 0.4538 MSKRKFGFEGFGINRPATYSFERSEAPQRLYVPPSSRTGSSHDNYEDHDLDNIDYDDREGSVDALKESNGGDDGEIDPLDAFMEGIHEEMKAPPPSKAKEKAEKYRDDEEDDPVESFLRAKKDIGLTLASEVLQAGYDSDEEVYAAAKAVDAGLIEYDSDDNPVVLDKKKIEPIPALDHSSIDYEPFNKDFYEEQASISGMSEQDVAEYRKSLAIRVSGFDVPRPIRMFEDCGFSPQLMSAITKQGYAKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIFGQIRPDRQTLLFSATMPGKVEKLARENLTDPVRVTVGEVGMANEDITQVVHVVPSNAEKMPWLLEKLPGMIDNGDVLVFASKKATVDEIESQLVQNGFKVAALHGDKDQASRMEILQKFKSGTYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTLKEARFAGELVNSLIAAGQNVSMELMDLAMKDGRFRSKRDARKGSGGKKARGRGKGGGGGGSGRGVRGVDFGLGIGYNPESVNTPIQSAPSRSAAVNALRTGMMAQFKSNFVAATPDSQSQARNNNSSTFASMRPVLAGFVSGGSIGGDTNRAQTASSFNPAPTSGGNTTGENSRENGTQKNSESSRDRPRERRRPSGWDR* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01225 779 MobiDBLite consensus disorder prediction 612 643 - -
Eupl12g01225 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 433 IPR014001 -
Eupl12g01225 779 MobiDBLite consensus disorder prediction 1 113 - -
Eupl12g01225 779 MobiDBLite consensus disorder prediction 80 113 - -
Eupl12g01225 779 Pfam DEAD/DEAH box helicase 251 422 IPR011545 GO:0003676|GO:0005524
Eupl12g01225 779 Gene3D - 189 434 IPR027417 -
Eupl12g01225 779 Pfam Helicase conserved C-terminal domain 470 567 IPR001650 -
Eupl12g01225 779 MobiDBLite consensus disorder prediction 759 779 - -
Eupl12g01225 779 CDD SF2_C_DEAD 445 577 - -
Eupl12g01225 779 MobiDBLite consensus disorder prediction 726 779 - -
Eupl12g01225 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 605 IPR027417 -
Eupl12g01225 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 436 IPR027417 -
Eupl12g01225 779 SMART helicmild6 486 567 IPR001650 -
Eupl12g01225 779 MobiDBLite consensus disorder prediction 41 73 - -
Eupl12g01225 779 Gene3D - 435 611 IPR027417 -
Eupl12g01225 779 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 379 387 IPR000629 -
Eupl12g01225 779 SMART ultradead3 246 448 IPR014001 -
Eupl12g01225 779 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 227 255 IPR014014 GO:0003724
Eupl12g01225 779 FunFam probable ATP-dependent RNA helicase DDX17 189 436 - -
Eupl12g01225 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 458 607 IPR001650 -
Eupl12g01225 779 MobiDBLite consensus disorder prediction 726 758 - -
Eupl12g01225 779 CDD DEADc_DDX42 238 434 - -
Eupl12g01225 779 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 191 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01225 Eupl-Chr12 28779015 28785324 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01225 225 577 Eukaryotic Initiation Factors Gene Family AT3G19760 33.427 2.79e-61 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01225 K12835 - nnu:104605060 1243.02