Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01216 ATGATGCTAACTTTTTTATCCATCACCCTCCTCCTTGCCGCCTTCTCCTCCACCATCACCACTACCTCCGCCGCCTATGATAACAGCTCGGACACCATACTCCGGCGCATCTGCGGCCTCACCCAAGCCATCAATCCTCAATCCTTCGATGTAAATTTCGTCGATGCAATGGAAATTATATCCCAAAACGTTGCGAAAACGGGTTTCAGTGTCTCCGTCTCTGGTGAGAATTCCTCCAACCGCGTGTATGGCCTCGGGCAGTGCTTCAATTATCTCTCTAACATAGATTGTAGGCTATGTTACGCAGAAAGCAGAGTGAAGCTACCACTCTGCCTGCCTGCCACTGCTGCCCGAGTCTACCTCGACGGTTGCTTCTTACGCTACGGAGACTACAACTTCTCTCAAGAAGCCGTCGGTGATTCCGACACATCCCTTTGTGGGTCGTCGAAGAATGTATCGAATTCAACGAAATTTGGGGAATTGACAAATGGGTTGATCCAGAATTTGACCTCAAAGGCCTATGAAGTGGTAGATTATTACGAGGAGGGGCGTGTTTTAGTGTCGTCGGGTGTTTCGGTTTACGGGATGGCACAGTGTTGGAAATCTATGAATAAGAGTGGGTGTAAGGAATGCTTGGAAAGTGCAAGAAAAAGTGTTCTTGGATGTTTACCTGGTTCTGAAGGAAGAGCTTTGAATGCTGGGTGCTTTGTGAGGTACTCGACAGAGCCGTTTTATATAGCAGCACTGTCGAGCACTAGTTCTTCTTCAGTGGCTCCGCGACGTTTGGCAATTGCACTTGGATCAATTTTTTCCGCGGTTGTCGTTATAGGAGGAGCTATACTCTGGAAAAGAAGGGGATCTTCTAGTGGTGCTGATGACGAGGATGGCTCGTCGGAAATCCTCAGATCAATTTCAGAATCCCGCCTCTGTTTCAAATACAATGACCTGAGAAAAGCTACTAAGGACTTCGATATGGGAAACAAAATCGGCCAAGGAGGTTATGGTTCAGTTTACAAGGGAATTCTACCTGATGGTACTGAAATTGCAGTGAAGAGACTGTTCTTCAACACAACCCAATGGGTAGATCAGTTCTTCAATGAAGTCAATCTGATCAGCCGGGTTCAACACAAAAACCTCGTTAAGCTTCTCGGGTGCAGCGTTGATGGTCCTGAGAGCCTCCTGGTTTACGAGTACCTTCGCAACACTAGCCTTGACCAGTTCTTATTTGATTCATTTAAGAAGGAGGCTTTAGACTGGAGAAGGAGATTTGATATAATTGTTGGCACAGCAGAGGGGCTAGCTTACCTCCATGAAGCTTCTGAGGTTAGGATCATTCATAGAGATATAAAAGCAAGTAATATTCTGCTGGATGAAAGATTCAAGCCTAAGATAGCCGATTTCGGACTAGCGAGGTATTTTGCCGAGGGTCAGAGCCATCTCAGCACCGGCTTAGCCGGAACTCTAGGGTACATGGCTCCCGAATACGTCGTTCATGGGCAGTTAACAGAGAAGGCTGATGTCTACAGCTATGGAGTTCTTGTTCTTGAAGTGATCACAGGCCGTAAAAACACTAAATCCATATCATCGGCAGAAGGTCACTCTCTATTGTCACAGATATGGGGGCATTTTACTTCAAAAACTCTCATTGAGCTGCTCGATCCTCGTCTTCGAGACCAATGCACCGAAGAACAAGTCCTAAAGGTGTTTAATGTAGGACTACTTTGCACACAAGCATCTCCTAGTCTTCGGCCATCAATGTGGAAGGTTGCGGAGATGCTGAACGGTACGGCAAGGGATCTACCTGTTCCCACTCAGCCACCATTCATCAACATCAAGGGTGTAGAAGTCAGGAGTGAGAGTTCTGGAACCTCTTATTTGTTCTCCTCGTCTTCCAAATCGCCCGTTTCAGTGAACCAGATGTCTCTGAGTATTATGCGTGGAAGATGA 1947 0.4669 MMLTFLSITLLLAAFSSTITTTSAAYDNSSDTILRRICGLTQAINPQSFDVNFVDAMEIISQNVAKTGFSVSVSGENSSNRVYGLGQCFNYLSNIDCRLCYAESRVKLPLCLPATAARVYLDGCFLRYGDYNFSQEAVGDSDTSLCGSSKNVSNSTKFGELTNGLIQNLTSKAYEVVDYYEEGRVLVSSGVSVYGMAQCWKSMNKSGCKECLESARKSVLGCLPGSEGRALNAGCFVRYSTEPFYIAALSSTSSSSVAPRRLAIALGSIFSAVVVIGGAILWKRRGSSSGADDEDGSSEILRSISESRLCFKYNDLRKATKDFDMGNKIGQGGYGSVYKGILPDGTEIAVKRLFFNTTQWVDQFFNEVNLISRVQHKNLVKLLGCSVDGPESLLVYEYLRNTSLDQFLFDSFKKEALDWRRRFDIIVGTAEGLAYLHEASEVRIIHRDIKASNILLDERFKPKIADFGLARYFAEGQSHLSTGLAGTLGYMAPEYVVHGQLTEKADVYSYGVLVLEVITGRKNTKSISSAEGHSLLSQIWGHFTSKTLIELLDPRLRDQCTEEQVLKVFNVGLLCTQASPSLRPSMWKVAEMLNGTARDLPVPTQPPFINIKGVEVRSESSGTSYLFSSSSKSPVSVNQMSLSIMRGR* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01216 648 Gene3D - 141 244 IPR038408 -
Eupl12g01216 648 Gene3D - 29 133 IPR038408 -
Eupl12g01216 648 SMART serkin_6 323 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g01216 648 FunFam Cysteine-rich receptor-like protein kinase 3 142 244 - -
Eupl12g01216 648 ProSiteProfiles Gnk2-homologous domain profile. 31 133 IPR002902 -
Eupl12g01216 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Eupl12g01216 648 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Eupl12g01216 648 ProSiteProfiles Protein kinase domain profile. 323 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g01216 648 Gene3D Phosphorylase Kinase; domain 1 287 398 - -
Eupl12g01216 648 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 622 - -
Eupl12g01216 648 FunFam Cysteine-rich receptor-like protein kinase 2 399 600 - -
Eupl12g01216 648 Pfam Protein tyrosine and serine/threonine kinase 325 593 IPR001245 GO:0004672|GO:0006468
Eupl12g01216 648 FunFam Putative DUF26-domain receptor-like protein kinase family protein 297 398 - -
Eupl12g01216 648 ProSiteProfiles Gnk2-homologous domain profile. 140 244 IPR002902 -
Eupl12g01216 648 Gene3D Transferase(Phosphotransferase) domain 1 399 600 - -
Eupl12g01216 648 CDD STKc_IRAK 329 595 - -
Eupl12g01216 648 FunFam Cysteine-rich receptor-like protein kinase 2 31 133 - -
Eupl12g01216 648 SUPERFAMILY Protein kinase-like (PK-like) 307 627 IPR011009 -
Eupl12g01216 648 Pfam Salt stress response/antifungal 46 131 IPR002902 -
Eupl12g01216 648 Pfam Salt stress response/antifungal 146 241 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01216 Eupl-Chr12 28603384 28606819 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01216 45 624 Receptor kinase-like Gene Family AT1G70520 47.119 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Eupl12g01216 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01216 - - tss:122657769 951.814