Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01215 ATGGCTAGGGTTCCAAACAAGCACAATCGTGATCAAAATCTGGATTTCCAGGGATTTTTGAACGACTTGCAAGATTGGGAACTTTCGCTTAAGGAGAAAGACAAAAAATTGAAAGTTCAATCTCATGAAGAGAAAAAAGTGGGGTCTTCCTCTCAGAAGATTGGAATCATAGGTGAAGAAAAAGGATCCACAAGAAAAGCTCCTTCAGTCGGTTATTCGAGAAATAATGGACCACAATACGACTACTTGAGAAACTCTGAGGCAATTAGTCAAATATCAAGTAGCTTTCTAACTGAAGAAAGTTCTCCAGATGCTGCTTCAGAGAAAGAACTGGGTAATGAGTATTTTAAGAAGAAAAAGTTTAAGGAAGCAATTGACTGCTATTCAAGAAGCATTGCGTTATCACCCACAGCAGTAGCTTTTGCAAATAGAGCCATGGCATACCTCAAAATCAGAAGATTTGAAGAGGCCGAGAATGACTGTACAGAGGCCTTAAATTTGGATGACCGCTACATAAAAGCATACTCACGGCGTGCAACAGCCAGGAAAGAACTTGGAAAACTTAAATCGTCCATTGAAGATTCCGAGTTTGCCCTGAGGCTAGAGCCTGACAGCCAAGAACTCAAGAAGCAGTATGCTGAGGCAAAAGCCCTGTATGAGAAGGAGATTCTTGAGAAAGCATCTGAAGCAGTCAGAAACTCCACTCAAGGAGTGCAAAGAGTAGGAGTGACTGCAGTTCAAGCGGATCATACCGAGGTTCCTGGTAAGCCTTCAGTCATTGTAAAGGAAATGGAGAACAGATCTATGAGAGCTGAAAACAGTAGTGGGGGGCAGGAATCAAATGGATCTCTTGAAGGGGCATCCCTGAGCTCTGGTACAAAAGGTTCTAAGAAAGGTCATGTTGTTGATAACAAGCGAGAGCTGAAGACATCAGTGCAAGAGCTTGCTTCACGAGCAGCTTCTCGAGCTATGGCTGAAGCTGCAAAAAATATTACTCCACCAAAGTCAGCTTACCAGTTTGAGGTTTCCTGGAGAGGACTCTCTGGTGACCGTGTGCTACAGGCTCATTTGCTGAAGGCTATATCTCCAATTACCTTACCACAGGTATTCAAAAATGCCTTGTATGCCCCAATGCTGGTTGAAATTATTAAGTGCATAGCCACCTTTTTCATGGAAGAAACTGAACTAGCTGTCAAATTTTTAGATAATTTGACAAAGGTCTCACGATTCGACATGATCATCATGTGTCTCTCTGCTGCAGACAGGGCTGATCTTCACAAGATGTGGGAGGAAGTATTCTCTAATGAGGCAGCTTCATATGAATATGCAGAGACACTCTGTAAACTGCGTTCGAGGTACTGCCCCGGAGGTTGGCAGATGCATGTTCTGGAGGAGTCTAATGGCTTGATCAAAGAGATATAA 1422 0.4297 MARVPNKHNRDQNLDFQGFLNDLQDWELSLKEKDKKLKVQSHEEKKVGSSSQKIGIIGEEKGSTRKAPSVGYSRNNGPQYDYLRNSEAISQISSSFLTEESSPDAASEKELGNEYFKKKKFKEAIDCYSRSIALSPTAVAFANRAMAYLKIRRFEEAENDCTEALNLDDRYIKAYSRRATARKELGKLKSSIEDSEFALRLEPDSQELKKQYAEAKALYEKEILEKASEAVRNSTQGVQRVGVTAVQADHTEVPGKPSVIVKEMENRSMRAENSSGGQESNGSLEGASLSSGTKGSKKGHVVDNKRELKTSVQELASRAASRAMAEAAKNITPPKSAYQFEVSWRGLSGDRVLQAHLLKAISPITLPQVFKNALYAPMLVEIIKCIATFFMEETELAVKFLDNLTKVSRFDMIIMCLSAADRADLHKMWEEVFSNEAASYEYAETLCKLRSRYCPGGWQMHVLEESNGLIKEI* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01215 473 MobiDBLite consensus disorder prediction 38 77 - -
Eupl12g01215 473 SUPERFAMILY TPR-like 101 242 IPR011990 GO:0005515
Eupl12g01215 473 ProSiteProfiles TPR repeat profile. 105 138 IPR019734 GO:0005515
Eupl12g01215 473 Gene3D Tetratricopeptide repeat domain 91 203 IPR011990 GO:0005515
Eupl12g01215 473 PANTHER OS05G0129900 PROTEIN 1 455 - -
Eupl12g01215 473 MobiDBLite consensus disorder prediction 268 307 - -
Eupl12g01215 473 SMART tpr_5 105 138 IPR019734 GO:0005515
Eupl12g01215 473 SMART tpr_5 139 171 IPR019734 GO:0005515
Eupl12g01215 473 SMART tpr_5 172 205 IPR019734 GO:0005515
Eupl12g01215 473 Pfam Potential Monad-binding region of RPAP3 333 422 IPR025986 -
Eupl12g01215 473 Pfam Tetratricopeptide repeat 140 168 IPR019734 GO:0005515
Eupl12g01215 473 Pfam Tetratricopeptide repeat 109 137 IPR001440 GO:0005515
Eupl12g01215 473 Coils Coil 205 225 - -
Eupl12g01215 473 MobiDBLite consensus disorder prediction 270 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01215 Eupl-Chr12 28589779 28596398 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01215 109 201 U-box Gene Family AT3G07370 35.106 6.88e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01215 K23002 - msin:131230814 575.859