Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01178 ATGGAAGATTTCCGAGAACCTTCAGTTTCTCCTTTATGTAACAACTCCAGTGCCACCACCGGAAAAACCCCCAAAGGTGAGGTTTTTCCGGTTAAAGATATAAAGCCTGTTGTTCGGTTTCCTCTCTCTGTTTCTGCTCAAGACTTGAGAACTTTAGACATGGAGAAGGAAAGACTGAACGAGTCTTCTCCTAGAGGAGTTCTTGAAGACTGCATAAGTAACTTGGAATTTGGAAGGGATTCTTCCAAGGCCAGCACCTCAGACTCTGAAGCTCATCTGCATCACAGGGCTACTTCATGGCGTGGATTCTTCCATTTATTGAAAAATAGATCAATGAGACGCTTAGCCACCTCCCCTTCTGTCAGGGTTCCAAAGTTTTCAGGAAGAAACAGCAGAAGTGTGAGAGAGAACCCAGTTAAAATATTGAATCGCGCTGAAGATACTGATTTCTATTGTTTCAAGTCTTACTGGAAGAATTTCACGCTCTCTGAGCTGCAAAATTCCACCAACAATTTTAGTTCTGAAAATGTGATCGGAAAGGGGGGTTATGCTGAAGTTTACAAGGGGTGTTTGCAAGATGGGCAGCTTGTAGCAATTAAGCGGCTGACCCAAGGAACGCCAGAAGAGAGGACCGCGGCCTTCTTATCCGAGCTTGGGATTATAGTTCATGTCAACCATCCTAATACTGCTAAGTTGATTGGGTATGGGATCGAAGGAGGAATGCACCTTGTTCTTCAATTGTCTCCCCATGGGAGCTTAGCTTCTTTACTTCATGGTTCAAAGGCGAAATTAGAATGGAGAATTAGGTATAAGGTTGCTTTAGGGACAGCTGAGGGTCTTTTATATCTTCACCAGAGTTGTCAAAGGCGAATTATCCACAGAGATATCAAGGCTGCTAATATTTTGCTTACAGAGGACTTTGAGGCTCAGATTTGCGATTTTGGGCTTGCAAAGTGGTTGCCTGAACAGTGGACTCATCACACTGTATCAAATGTTGAAGGCACGTTCGGCTATCTTGCTCCTGAGTACTTCATGCATGGCGTAGTAGATGAGAAAACTGATGTTTTTGCTTTCGGGGTGCTACTGTTAGAGCTCATCACTGGACGCCGAGCTTTGGATAATGCACAGCAAAGCCTCGCGATGTGGGCAAAGCCCTTGCTTGATAAGAATGATATCCGGGAGCTTGCAGATCCTTCCCTTGCTGATGCCTATGACTCACAACAGATGAATCGTGTGGCCTTGACAGCTTCTTTGTGCATACAACACTCTTCAATTCTACGACCTCAAATGAGTCAGGTTGTACAACTTCTAAGAGGTTATGAGACTAGCTACGAGGCTGTGAAACAATTTCAAAGGCCAATCCTCCAACGGACCTACTCGGAGGAGCTGTTTGATGCGGAAGAATATAATTCGACAAGGTATCTGGATGATCGGTATAAAAAGATTGCTTTGGAGTTCTGA 1461 0.4435 MEDFREPSVSPLCNNSSATTGKTPKGEVFPVKDIKPVVRFPLSVSAQDLRTLDMEKERLNESSPRGVLEDCISNLEFGRDSSKASTSDSEAHLHHRATSWRGFFHLLKNRSMRRLATSPSVRVPKFSGRNSRSVRENPVKILNRAEDTDFYCFKSYWKNFTLSELQNSTNNFSSENVIGKGGYAEVYKGCLQDGQLVAIKRLTQGTPEERTAAFLSELGIIVHVNHPNTAKLIGYGIEGGMHLVLQLSPHGSLASLLHGSKAKLEWRIRYKVALGTAEGLLYLHQSCQRRIIHRDIKAANILLTEDFEAQICDFGLAKWLPEQWTHHTVSNVEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRRALDNAQQSLAMWAKPLLDKNDIRELADPSLADAYDSQQMNRVALTASLCIQHSSILRPQMSQVVQLLRGYETSYEAVKQFQRPILQRTYSEELFDAEEYNSTRYLDDRYKKIALEF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01178 486 ProSiteProfiles Protein kinase domain profile. 172 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g01178 486 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 142 246 - -
Eupl12g01178 486 Gene3D Transferase(Phosphotransferase) domain 1 249 460 - -
Eupl12g01178 486 Gene3D Phosphorylase Kinase; domain 1 133 246 - -
Eupl12g01178 486 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 249 451 - -
Eupl12g01178 486 MobiDBLite consensus disorder prediction 9 23 - -
Eupl12g01178 486 ProSitePatterns Protein kinases ATP-binding region signature. 178 200 IPR017441 GO:0005524
Eupl12g01178 486 SUPERFAMILY Protein kinase-like (PK-like) 149 437 IPR011009 -
Eupl12g01178 486 Pfam Protein tyrosine and serine/threonine kinase 175 436 IPR001245 GO:0004672|GO:0006468
Eupl12g01178 486 SMART serkin_6 172 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl12g01178 486 MobiDBLite consensus disorder prediction 1 27 - -
Eupl12g01178 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Eupl12g01178 486 PANTHER OS08G0249100 PROTEIN 43 469 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01178 Eupl-Chr12 28189074 28193397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01178 149 486 Trihelix Transcription Factor Family AT1G70460 40.286 2.86e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Eupl12g01178 PK_Tyr_Ser-Thr 1.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01178 - - nnu:104586888 680.248