Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01165 ATGGGGAGGTACAGAAGCAGAAGCAGGAGCAGAAGCTACAGTCCACGGCGCAGCAGAAGCCCTCCTCCACGAAAGCGATACGACGACCCTCGCGACAGGCACCGAAGCAGCAGGCCAAACAGAGACAGACGATCTTCTGCTCCTTCTGGGTTGCTTGTTCGAAACATCTCTCTCGATGCAAGGCCTGAAGATCTTAGGAACCCGTTCGAACGTTTTGGCCCAGTGAAGGATGTGTATCTTCCCAAGAACTATTACACTGGGGAGCCACGGGGCTTTGGATTTGTGAAGTTCCATAATGGGGATGATGCGGCTGAAGCCAAGGAACAGATGAACCATCAAATTATAGGTGGACGTGAGATTAGAATTGTTTTTGCTGAAGAAAACAGAAAAACTCCTCAGGAAATGCGTACGACTACACGCACAAGCAGCCGACACGGAGGAGGCTATAGGAGGCGAAGTCCACCGAGATCCCCAAGACGTCGATATCGTTCCTATTCACGCTCGCCTTCACCTGTCAGGCGTGACTCAAGGGAGAAGGACCGTGTCGTGAGGGATGATTATTACTCGCCGCGACGATCCATCTCAAGGTCTCCCTCTGCGCGAGATGATAGGGACTACATGTCGGACCGGAGGTCACCGAGTTTGAGGGACAATGGTCGGAGCCCATCAAGGTCTCGTTCTTACAGGTACATCTCTTAA 699 0.5236 MGRYRSRSRSRSYSPRRSRSPPPRKRYDDPRDRHRSSRPNRDRRSSAPSGLLVRNISLDARPEDLRNPFERFGPVKDVYLPKNYYTGEPRGFGFVKFHNGDDAAEAKEQMNHQIIGGREIRIVFAEENRKTPQEMRTTTRTSSRHGGGYRRRSPPRSPRRRYRSYSRSPSPVRRDSREKDRVVRDDYYSPRRSISRSPSARDDRDYMSDRRSPSLRDNGRSPSRSRSYRYIS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01165 232 MobiDBLite consensus disorder prediction 125 232 - -
Eupl12g01165 232 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 121 IPR000504 GO:0003723
Eupl12g01165 232 MobiDBLite consensus disorder prediction 21 42 - -
Eupl12g01165 232 MobiDBLite consensus disorder prediction 1 20 - -
Eupl12g01165 232 MobiDBLite consensus disorder prediction 218 232 - -
Eupl12g01165 232 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Eupl12g01165 232 Gene3D - 2 141 IPR012677 -
Eupl12g01165 232 SMART rrm1_1 50 123 IPR000504 GO:0003723
Eupl12g01165 232 SUPERFAMILY RNA-binding domain, RBD 48 153 IPR035979 GO:0003676
Eupl12g01165 232 MobiDBLite consensus disorder prediction 145 167 - -
Eupl12g01165 232 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 44 226 - -
Eupl12g01165 232 MobiDBLite consensus disorder prediction 168 217 - -
Eupl12g01165 232 MobiDBLite consensus disorder prediction 1 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01165 Eupl-Chr12 28044509 28056348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01165 33 111 Eukaryotic Initiation Factors Gene Family AT4G34110 32.911 7.52e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01165 K12900 - cave:132183604 203.756