Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01155 ATGGCGGAAGGGCAAAGAACCCTCAAATCCAGCGGAGAGAGCGTAAAGCTCTTCGTCGGTCAGGTCCCCAAGCACATGACCGAAACTGAGCTCCTCGCCATGTTCAAGGAGGTGGCTTTGGTCGACGAGGTCAACATTATCAAAGACAAGAGCACTCGAACTTCACGAGGATGTTGCTTTCTGATCTGTCCGTCTAGGCAGGAAGCAGATAAGGCAGTCAATGCTTGTCACAATAAGCGAACACTTCCCGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGGCTAGGTTTGAGACTCATACACTGTTTAATTGATGTATTTCGTCCCTATGATGATTCCTCTAGTGGTGCCAGTTCTCATTCGGTATTGCATGCAGTAGTTTACATTGACTTACCATCTGTGCTAGGAATAGTTACATTTACTTTTTCTTCTCCTCTCTCTGTATTTGTTTTTGATTACTTTGATAAAGAGTTTTTGACTGTATCAGTAATTGACTTGTCTCCAGAACACAAGCTTTTTGTTGGTATGCTTCCTAAGAACGTTTCTGATGCTGAAGTTTCTGATTTATTTTCTAAACATGGAGCTATCAAGGATTTACAAATTCTGAGAGGTTCTCAACAGACAAGCAAAGGCTGTGCTTTTTTGAAATATGAGACAAAAGAACAAGCTCTTGCAGCCTTGGAGGCTATCAATGGGAAGTATAAGATGGAGGGTTCAAGTGTGCCTTTAGTTGTCAAGTGGGCAGATACAGAAAAGGAAAGGCAAGCTCGGAGAGCTCAGAAGGCTCAATCACAGGCTTCTGGTGTGCCAAATACCGATTCAACGCAGCAACCTTCATTATTTGGGGCCTTGCCGATGAGTTACATTCCCCAATATAATGGCTTTAGTTATCAGGCACCTGGAACTTACGGACTCATGCAGTACCCGCTGCCACCAATGCAGAATCAACCTGGCTTCCATAATATGATTCCACCAGTCAACCGAGGAAATGCATTGCGTGGAATGACACCTGATCTTGCTCCCAGTATATCACCTAGGAATTTTGCTACAATGCCTTCTTCCACTTATATAGGCTCTGCATATCCTGCCGTGCCAGGTCTTCAGTATCCTATGGCATATCCTGGTGGAATGATGAGTCAAAGACCTTTGAATAGTTCCCATGGTTCAGTCCCACCTGCAATTGTGAATAATAACTCAGCAACATCTTCAAGCATCAATACAAGTTCTGGGGTTCAGGCTGAAGGTCCTCCTGGTGCTAATTTATTTATTTATCACATTCCTCAAGAATTTGGTGATCAAGAGCTTGCAAATGCTTTTCAAGGATTTGGTAGGGTCTTGAGTGCTAAGGTCTTTGTTGATAAAGCAACTGGTGTTAGCAAATGTTTTGGCTTTGTCAGTTATGACTCACCATCTGCGGCCCAGTCTGCGATTAATATGATGAATGGATTCCAGCTTGGTGGTAAGAAGTTGAAGGTACAGCTTAAGAGAGACAACAAACAGAATAAACCTTATTGA 1533 0.4344 MAEGQRTLKSSGESVKLFVGQVPKHMTETELLAMFKEVALVDEVNIIKDKSTRTSRGCCFLICPSRQEADKAVNACHNKRTLPGASSPLQVKYADGELERLGLRLIHCLIDVFRPYDDSSSGASSHSVLHAVVYIDLPSVLGIVTFTFSSPLSVFVFDYFDKEFLTVSVIDLSPEHKLFVGMLPKNVSDAEVSDLFSKHGAIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKYKMEGSSVPLVVKWADTEKERQARRAQKAQSQASGVPNTDSTQQPSLFGALPMSYIPQYNGFSYQAPGTYGLMQYPLPPMQNQPGFHNMIPPVNRGNALRGMTPDLAPSISPRNFATMPSSTYIGSAYPAVPGLQYPMAYPGGMMSQRPLNSSHGSVPPAIVNNNSATSSSINTSSGVQAEGPPGANLFIYHIPQEFGDQELANAFQGFGRVLSAKVFVDKATGVSKCFGFVSYDSPSAAQSAINMMNGFQLGGKKLKVQLKRDNKQNKPY* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01155 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 425 503 IPR000504 GO:0003723
Eupl12g01155 510 FunFam RNA-binding protein BRN1 392 502 - -
Eupl12g01155 510 Gene3D - 171 265 IPR012677 -
Eupl12g01155 510 FunFam RNA-binding protein BRN1 2 99 - -
Eupl12g01155 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Eupl12g01155 510 FunFam RNA-binding protein BRN1 isoform X1 173 265 - -
Eupl12g01155 510 PANTHER RNA BINDING PROTEIN 15 505 - -
Eupl12g01155 510 MobiDBLite consensus disorder prediction 260 283 - -
Eupl12g01155 510 CDD RRM1_2_CELF1-6_like 177 252 - -
Eupl12g01155 510 Gene3D - 397 502 IPR012677 -
Eupl12g01155 510 MobiDBLite consensus disorder prediction 266 283 - -
Eupl12g01155 510 SMART rrm1_1 177 252 IPR000504 GO:0003723
Eupl12g01155 510 SMART rrm1_1 16 92 IPR000504 GO:0003723
Eupl12g01155 510 SMART rrm1_1 426 499 IPR000504 GO:0003723
Eupl12g01155 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 427 497 IPR000504 GO:0003723
Eupl12g01155 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Eupl12g01155 510 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 242 IPR000504 GO:0003723
Eupl12g01155 510 CDD RRM1_2_CELF1-6_like 16 92 - -
Eupl12g01155 510 SUPERFAMILY RNA-binding domain, RBD 10 99 IPR035979 GO:0003676
Eupl12g01155 510 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 256 IPR000504 GO:0003723
Eupl12g01155 510 SUPERFAMILY RNA-binding domain, RBD 175 507 IPR035979 GO:0003676
Eupl12g01155 510 Gene3D - 4 100 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01155 Eupl-Chr12 27937905 27952732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01155 420 510 Eukaryotic Initiation Factors Gene Family AT1G22760 32.967 2.92e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01155 K13207 - ming:122091680 564.303