Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01151 ATGCAAGTGGTACCAGTCTTTAATGGCGTCGAAGGAGATTCTCGAGAGGATGACAACCAAATCACAAGGCCAACCAGTGAAGAAATTACTCCTTCAGGGCCCAGTGGAAGGCATGCAGATCTCTCACTTCAAATACCCCCTAGACCAGTAGCTTTTGGCAGTAGCCGTAGTGGAAAGGGTCTACTCCAGACTCAGGATTCCTTGAAAGGTATTTCAACTACAGGAGGCTTCTTGCGTGGGCTAAGCTTCAAGAACAAGGTAGCAGCGCTTGATGGTGAGGGAAGCTCCCTCCTCAATCTGGACCCCAGGGAGGCTCCTGGGAGCCCTGTCCTGGACAGTTTAATTTCCGCACTCTCCTGGAAAAGATGTGTTTCTCTTCCTGTTACACCTGCGTCAAACTTGTCCCCTTCAGTTTCCACACCTACAGCAAAAATGTGTGGTGAGCAACGAACTTCACATAGACAGGCAGTTCCAGCTAAGGTCTCGCGTTCCTTGTCTGTACCAATGCGAAATGTCATTATTGTGAGGTCAGGATCCTTCGCTACCCGTAAAGAGCCAGTGAAAACAGATCCTAGTGAGGATCAAATAAGTCCAGTTCACATGGAAAACGACGATGAAGAGATTTCTGAGGAGCAAGCAGTTTGCAGGATCTGTTTAATCGAGTTGTGTGAAGGCAATACACTCAAGATGGAGTGCAGTTGCAAGGGTGATCTCACGCTTACACATGAAGAATGTGCAGTGAAGTGGTTCAGAATCAAAGGCAACAAGAGGTGTGATGTCTGTGGGCAAGAAGTTCGGAATTTACCAGTCACTGTGCTTCGGCTGCAGAGTTCTGCTCAAAGGGAAAACAGACAGGAACGCAACAGACAGAGTCCAAATTCACAGTCAATGAGTGTCTGGTCTGACTTGGTGGTGCTCGTCTTGATTAGCACAATATCTTATTTCTTTATCCTTGAGCAGCTACTGGTTCGTGAATTGAAATCTCAAGCGGTCATGGTTGCAGCACCTTTTTCTTTCACCCTGGGCCTTTTGGGGTCAATGTTCGCAACCGTATTAGCAATCAAGGAGTATATATGGAGTTACGCAGCTCTCGAGTTTGCACTCGTCGCCATGATTCTCCATCTATTTTATTCTGCACTTCACTATGATGCAGTCTACGCAATTCTTTATTCGGCTATTTTGGGTTTTGGGATTGCAATGAGCCTAAACTCGCTATATCTTCAATTTTATGCTTGGCGAACTCGGGTTACCCAGACACAGATGAACACTAATCCAGTCTGA 1281 0.4653 MQVVPVFNGVEGDSREDDNQITRPTSEEITPSGPSGRHADLSLQIPPRPVAFGSSRSGKGLLQTQDSLKGISTTGGFLRGLSFKNKVAALDGEGSSLLNLDPREAPGSPVLDSLISALSWKRCVSLPVTPASNLSPSVSTPTAKMCGEQRTSHRQAVPAKVSRSLSVPMRNVIIVRSGSFATRKEPVKTDPSEDQISPVHMENDDEEISEEQAVCRICLIELCEGNTLKMECSCKGDLTLTHEECAVKWFRIKGNKRCDVCGQEVRNLPVTVLRLQSSAQRENRQERNRQSPNSQSMSVWSDLVVLVLISTISYFFILEQLLVRELKSQAVMVAAPFSFTLGLLGSMFATVLAIKEYIWSYAALEFALVAMILHLFYSALHYDAVYAILYSAILGFGIAMSLNSLYLQFYAWRTRVTQTQMNTNPV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01151 426 PANTHER OS02G0165000 PROTEIN 16 420 - -
Eupl12g01151 426 SMART ringv_2 214 262 IPR011016 GO:0008270
Eupl12g01151 426 CDD RING_CH-C4HC3_MARCH 215 262 - -
Eupl12g01151 426 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Eupl12g01151 426 MobiDBLite consensus disorder prediction 132 159 - -
Eupl12g01151 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 270 IPR013083 -
Eupl12g01151 426 SUPERFAMILY RING/U-box 210 265 - -
Eupl12g01151 426 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Eupl12g01151 426 MobiDBLite consensus disorder prediction 1 41 - -
Eupl12g01151 426 MobiDBLite consensus disorder prediction 132 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01151 Eupl-Chr12 27894966 27901977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01151 203 317 C3H Transcription Factor Family AT2G37950 32.258 3.19e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01151 - - mof:131150890 535.028