LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl12g01148	ATGGAGTGCAACAAAGAAGAGGCTGTCAGAGCCAAGGAAATCGCGGAGAAAAAGATGCAAAACAAGGATTTTGTGGGAGCTCGGAAGATTGCCCTTAAGGCCCAACAGCTCTTTCCGGATCTTGAGAACATCTCCCAGATGCTAACAATTTGTGAGGTACACTGTTCGTCCAAGCATAACATGTCGGGGTCTGAGATGGACTGGTATGGTATCCTTCAAGTTGAGCAAACGGCGGATGAGATATCCATCAAGAAGCAGTATCGGAAGCTTGCTCTCCTACTTCATCCTGATAAGAACAAGTTTTCTGGTGCAGAAGCTGCCTTTAAACTGATTGGGGAAGCACAGAGGGTGCTTTCAGACCAGGTAAAACGGTCTGTATATGACATCAAGCGTGGAGCCTTCCTGAGAACTGTTGCGCTGAAGCATCCCCCACAGCAACCAAATAGGAACTCTTATTTCAGGGAACAATCTGGGGTACAGAACAATTTTGTGAATTCTACTACTCCACAGTTCACGTGCTTTAACCCTCATCAGCAGCAACAGAAGCAGCAGCAGCAGGCCCAACCACGGTTCTTCAATGGCCGACAGACTTTCTGGACTGCATGCCCTTTCTGTAATATCAGGTACCAGTATTACAGAGATATTGTGAACAGGTCTCTGTGTTGTCAAAGTTGCAAAAAGTCCTTTATTGCCCATGATTTGGAAGCTCAAGGTGTGCCACTGGGAGCTAACTGGAATCGCTCTGCATTTCCTCAACAGAAAGAGGGTGCAAGTGGGGCCACAGCATCGGAACCATTCCCAAAGACTGAAAGCACTTCTTATGTTGGCCGGAGGTCTAAAACAAAAGAGAAAGAAGATGGGGATGTGGGTATGGAAGTTGGGAAGGACAGTGAAAAGAGACCCAAGTTTGAGGCAGAAAAGCCCAAGGATGGGAAACCTTCAGGAAACACGGACAGGAAGAGGGGGAGGATGTCGGAAGTGAGATCCAGTGACAGTTGCGACACTGGAACCAGCTCTAGCACCGAGAAAGATGGTGGTCTCTCTGCAGGACAGACCACTGGATTCTCCGGGGGGCGTTATCCTCGGAGATCCACTCGGCAAAATCAGCATGTTACTTGTAATGAAGGTTTAAGTGGCAACAATGACTTTGTGAGCACTCCGAAAAGGTCAAGGGGGAGTCGATCATCAAATGTCACAGAGGAGCAGAGTAATGAAGCATCTTTGAAAGGAGAGGTTTCTAAAACTGAAGGACTAGCTGGTTTTGCTGCTGTTTTTGAAGAAGATAAGGAAGAGGAGAAACAAGAAGGAAGTTCCCCTCCCGAAGAAAGCTTACCAAATGGAAGTGACGGTGCTGAGTGTAGGACAAATGCAAAAGAAGCAGCTTCTGTGGACGGCAATAAGGAAAGATACAAAGTCAGTGAGAATTCTAATTCAAATCTGGGGTCCGTAACCAAACCAGATCCAGAGTTCTTTCACTGCCCTGATCCAGATTTTAATGACTTCGAAAAGGACAGAAAAGAGGGACATTTTGCAGTTGATCAGATCTGGGCTGTTTATGATGATTTAGATTGCATGCCTAGATTCTATGCTCGGATTAGGAAAGTTTTCTCCCCTGGGTTCAAGCTGCGGATCACTTGGCTTGAGGCTGATCCAGATGAACAAGACGAGCTTGATTGGGTCGATGAAGACTTGCCTGTTGCTTGTGGTAATTTCAAACAGGGAAACTCCGAAAATACTGAAGATCATCTTATGTTCTCTCATTTGATCTACTGGGAAAAAGGCACTAGTAGAGGTTCTTACACAGTATATCCTAGGAAGGGTGAAACTTGGGCCCTTTTCAAGAACTGGAATATTAGATGGAGCTCTGATCCAGACAAGCATAGACTGTATGAATATGAATTTGTAGAAGTTCTGTCAGATTATGCCAAGGGGTCGGGCATTAGCGTTGCATACTTGGTTAAGGTGAAAGGGTTCGTAAGCCTGTTTAGGCAAACAATAAAGAATGGAACGTTCTCAGTTCAGATTCCACCCAATGAACTCTTCAGATTTTCCCACAGGATTCCTTCTTTTAGAATGACTGGTACGGAAAGAGAAGATGTCCCGGAAGGGGCTTTCGAATTTGATCCTGCTTCTCTGCCCAATGACCTCGAAGAATTTGCTGATGAGAAGAATAAACCCAATACGCCAAATAAGAGCATAAACCCTGATGAGAAGAATACACGGGACAGGTTGAATTCAAAAAGTGGAATCCAGTCTCCAAGGGAATCAAATGGGAGTCATAAGGAGAAGTCAAGTCAAACAAACGTAGGTCAATGTGCGGTCGAGGAGATTGGCAAGCATTTAGATGATGTGAAAGACAGCAGTATCGATGGCTCCACTTCTGGAGAAGTAAATGCATCTACATTTAAGGCCGATGCAAAGGAGAGGCCTTTAGATGCCATGGAGACTAGTCCTGACAGTGTCATTGAAGACCATTGTCCTTCACCAGCTTCATCTGAGGAAGATTACGAAATTCCAGATCCAGAGTTCTACAACTTTGACAGTGACAAATCCCGTGAGAAGTTTCAGCCTGGTCAGATCTGGGCATTGTACTGTGACTTGGATGGCTTGCCTAAGTACTATGCTCAGATAAAGGATATTGAGTCACCCCCAAATTTCAAATTGCACATAACATGGCTTGAAGCCTGCCCACTGCCAAAGGACATTATTCAGTGGTTCGACAAGGCCATGCCCATTTGCTGTGGGACATTTAAGCTTGCAACTGGCGAAACGAAGGTCTATACCAAGACCAATCCCTTTTCTCATCAGTTAAGAGCGAAACCCTTCAGTAAGAACAAGTATGAGATCTACCCAAGGAAAGGTGAGGTATGGGCGCTATACAAGAATTTTAGTTCCAAATGGAGATGTTCTGATCTGGATAAATGTGACTATGACATGGTGGAAGTCCTCGAGGATAATGGATCAACGACCAAAGTCTTGGTTTTGGCACAGGTGGATGGGTTTAAGACGGTTTTCAGGGCTCAAAGAAAAGGAGGATCTGCAGTAACTTTGGAGATACCGCGGGTTGAATTACTTCGATTCTCTCATCAAGTCCCCGCTTTCCGGCTAATGGAGGAGAGAAGTGGCAGCCTGAGAGGCTGTTGGGAGCTCGATCCTGCATCAATTCCAGTTCTTTTATTTTGTTCAAATTGA	3192	0.453	MECNKEEAVRAKEIAEKKMQNKDFVGARKIALKAQQLFPDLENISQMLTICEVHCSSKHNMSGSEMDWYGILQVEQTADEISIKKQYRKLALLLHPDKNKFSGAEAAFKLIGEAQRVLSDQVKRSVYDIKRGAFLRTVALKHPPQQPNRNSYFREQSGVQNNFVNSTTPQFTCFNPHQQQQKQQQQAQPRFFNGRQTFWTACPFCNIRYQYYRDIVNRSLCCQSCKKSFIAHDLEAQGVPLGANWNRSAFPQQKEGASGATASEPFPKTESTSYVGRRSKTKEKEDGDVGMEVGKDSEKRPKFEAEKPKDGKPSGNTDRKRGRMSEVRSSDSCDTGTSSSTEKDGGLSAGQTTGFSGGRYPRRSTRQNQHVTCNEGLSGNNDFVSTPKRSRGSRSSNVTEEQSNEASLKGEVSKTEGLAGFAAVFEEDKEEEKQEGSSPPEESLPNGSDGAECRTNAKEAASVDGNKERYKVSENSNSNLGSVTKPDPEFFHCPDPDFNDFEKDRKEGHFAVDQIWAVYDDLDCMPRFYARIRKVFSPGFKLRITWLEADPDEQDELDWVDEDLPVACGNFKQGNSENTEDHLMFSHLIYWEKGTSRGSYTVYPRKGETWALFKNWNIRWSSDPDKHRLYEYEFVEVLSDYAKGSGISVAYLVKVKGFVSLFRQTIKNGTFSVQIPPNELFRFSHRIPSFRMTGTEREDVPEGAFEFDPASLPNDLEEFADEKNKPNTPNKSINPDEKNTRDRLNSKSGIQSPRESNGSHKEKSSQTNVGQCAVEEIGKHLDDVKDSSIDGSTSGEVNASTFKADAKERPLDAMETSPDSVIEDHCPSPASSEEDYEIPDPEFYNFDSDKSREKFQPGQIWALYCDLDGLPKYYAQIKDIESPPNFKLHITWLEACPLPKDIIQWFDKAMPICCGTFKLATGETKVYTKTNPFSHQLRAKPFSKNKYEIYPRKGEVWALYKNFSSKWRCSDLDKCDYDMVEVLEDNGSTTKVLVLAQVDGFKTVFRAQRKGGSAVTLEIPRVELLRFSHQVPAFRLMEERSGSLRGCWELDPASIPVLLFCSN*	1064

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl12g01148	1063	Gene3D	DnaJ domain	64	197	IPR036869	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	329	410	-	-
	Eupl12g01148	1063	Pfam	DnaJ domain	67	128	IPR001623	-
	Eupl12g01148	1063	SUPERFAMILY	Chaperone J-domain	61	131	IPR036869	-
	Eupl12g01148	1063	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	719	-	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	423	438	-	-
	Eupl12g01148	1063	CDD	DnaJ	67	120	IPR001623	-
	Eupl12g01148	1063	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	809	838	-	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	275	328	-	-
	Eupl12g01148	1063	Pfam	Domain of unknown function (DUF3444)	834	1039	IPR024593	-
	Eupl12g01148	1063	Pfam	Domain of unknown function (DUF3444)	489	696	IPR024593	-
	Eupl12g01148	1063	SMART	dnaj_3	66	123	IPR001623	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	252	488	-	-
	Eupl12g01148	1063	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Eupl12g01148	1063	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Eupl12g01148	1063	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	719	769	-	-
	Eupl12g01148	1063	MobiDBLite	consensus disorder prediction	252	274	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl12g01148	Eupl-Chr12	27870983	27874174	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl12g01148	4	234	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	31.780	5.69e-27	112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl12g01148	-		-	nnu:104585627	1211.44