Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl12g01143 ATGGGTTCTGTTGGGGCCGCTGAAGGGTTGAACTTGGAGGGTCTATGTCCTAACGTTAATGGCACTACCTGCTTAGAGGAGGCTCTGCTTTGCGCAAGCCAAGAAGAGAAAGATGGATTATATTGTGAACTCTGGCATGCATGTGCGGGGCCCCTCGTCACTGTTCCTCGTGTCGGCGATAAGGTCTTCTACTTCCCTCAGGGTCACTTGGAACAGGTCGAGGCGTATACGAATCAAGAAACTAATGTGCAAATGCCAACCTACAATTTACCTTCCAAGATCCTCTGCAGGGTTGTATATGTTCAGCTTAAGGCTGATTTGGATACTGATGAAGTGTTTGCTCAAGTGACATTGCTTCCAGAGACAAAGCAAGACAAGCGTAGAATGGAGAACGGAATTTTTCCATCTCCGCCTCAGAGGACTCATGCATGCTCCTTTTGCAAGACGCTCACTGCATCCGACACAAGCACGCATGGCGGATTCTCTGTTCTTAAACGACATGCGGATGAGTGCCTTCCGCCACTGGACATGAATCAGCAACCGCCGGCACAGGAACTGGTAGCAAAGGACTTGCATGGGGTAGAGTGGCGCTTCCGCCATATTTATCGTGGTCAGCCTAAGCGGCACTTGCTTACCAGTGGTTGGAGTACATTTGTGAGCTCGAAAAGGCTTGTTGCAGGGGATACTTTTATTTTCCTCAGAGGAGACAATGGAGACCACCGTGTTGGGGTTCGCCGTGCTATAAAGCTACCAAACACTGCATCGACTTCTGTCATATCAAGTCATGGCATGCAACTTGGCATACTTGCCACTGCTTCCCATGCCATTTCTACTGGGACCATGTTCAGTGTGTATTACCGCCCTAGGACAAGTCCTGCTGAATTCATAGTTCCATATGATCAATACATGAAATCAGTTAGAAACAGCTATTCAGTTGGAATGAAGTTCAGAGTGAAGTGTGAGGGCGAAGAATGTCCAGAACAAAGACTTGCAGGGACCATTGTTGGTATTGAAGAAGTTGATCACATTAGATGGCCTGGTTCGAAATGGAGATGTCTCGTGGCTCAATGGGATGAAAGCTCTTCCACTGCCGTACATCCGGACAGAATTTCTCCATGGAAAATTGAACCACTTGGAATCACCAACACAAGGCGGCCTGTGGTTTTACCCCGACCAAAGAGGGCCCGAACCTGTCATTCGTCATCTCTTGAGCCATCTGCCTTGGTCAACGATGGCTCGTCGCGGGGGCGGGGTTGGATCGAACCTGCACCACCACCTCAAAGACAGTTGGGGGTCTTGCAAGGTCAAGAAATCAATGCAATAGGTGCGCGCGAGTCTGGAAATGCACAAAAGCCACCATTTGCACATTGGGTTCCTCCAAACACTAATTGGGGGCAGACACAAATGGGGTTGGAGAATCAGCTTCACTTTCCAATGCATGATCCATTTTCTCTGTATCCTGACAAAGTGGTACCTATTCCCAATGGAATTCCAGATGATATAGGGCTTGGGAGCTACTGGCTGCCGCCATTTTCCACTTACATGACCGGTGGTGATGTTGGCTTAACTGAAAACTGGTCTATTCCACATGTCAGTTCCAACAATTCTGGGTTTCAGGGATTGAGAGCTCCTGAGCCCAAGGAAGGAGTTGATACACAGACGACTCAACCAAAAAACAGTGGCTCATGCATGCTCTTTGGTGTTGATTTAGTTAAAAGTCCACCAGAGCTCGCGTCACTAAATGTGACTACCATCGATCTCCAGCATCCTTGCCCTGTCTCTCAGGCAGCATCACAGTCAACCATCTTGGAGTCTGGTCAACTTTTGGACCCTTCCAAGAGTACGAACCCATCTGATTCAAGTGGGTCTGGCAGTGGTTTAGAGAAACCATGCAAGAATTGTTGCGTTACCACCCGAAGTTGCACCAAGGTTCTAAAGTATGGAACTACTCTTGGGAGATCAGTGGACCTCATGAGGTTTGCCGGGTATGATGAACTAATACGTGAGCTCGACCAGATGTTTGATTTTGGAGGGGGGTTGATGGACAGGAGCAATGGTTGGCATGTAACATACATAGACGATGAAGGCGATTCAATGCTGATTGGAGACTATCCATGGCCGGAATTCCGGTCTGTGGTGCGAAAGATGTTCATTTGCCCAAAGGAATAA 2169 0.4832 MGSVGAAEGLNLEGLCPNVNGTTCLEEALLCASQEEKDGLYCELWHACAGPLVTVPRVGDKVFYFPQGHLEQVEAYTNQETNVQMPTYNLPSKILCRVVYVQLKADLDTDEVFAQVTLLPETKQDKRRMENGIFPSPPQRTHACSFCKTLTASDTSTHGGFSVLKRHADECLPPLDMNQQPPAQELVAKDLHGVEWRFRHIYRGQPKRHLLTSGWSTFVSSKRLVAGDTFIFLRGDNGDHRVGVRRAIKLPNTASTSVISSHGMQLGILATASHAISTGTMFSVYYRPRTSPAEFIVPYDQYMKSVRNSYSVGMKFRVKCEGEECPEQRLAGTIVGIEEVDHIRWPGSKWRCLVAQWDESSSTAVHPDRISPWKIEPLGITNTRRPVVLPRPKRARTCHSSSLEPSALVNDGSSRGRGWIEPAPPPQRQLGVLQGQEINAIGARESGNAQKPPFAHWVPPNTNWGQTQMGLENQLHFPMHDPFSLYPDKVVPIPNGIPDDIGLGSYWLPPFSTYMTGGDVGLTENWSIPHVSSNNSGFQGLRAPEPKEGVDTQTTQPKNSGSCMLFGVDLVKSPPELASLNVTTIDLQHPCPVSQAASQSTILESGQLLDPSKSTNPSDSSGSGSGLEKPCKNCCVTTRSCTKVLKYGTTLGRSVDLMRFAGYDELIRELDQMFDFGGGLMDRSNGWHVTYIDDEGDSMLIGDYPWPEFRSVVRKMFICPKE* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl12g01143 722 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 721 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl12g01143 722 CDD B3_DNA 145 246 IPR003340 GO:0003677
Eupl12g01143 722 Pfam AUX/IAA family 680 717 IPR033389 -
Eupl12g01143 722 SUPERFAMILY DNA-binding pseudobarrel domain 142 275 IPR015300 -
Eupl12g01143 722 Pfam Auxin response factor 272 353 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl12g01143 722 ProSiteProfiles B3 DNA-binding domain profile. 146 248 IPR003340 GO:0003677
Eupl12g01143 722 FunFam Auxin response factor 309 382 - -
Eupl12g01143 722 Gene3D - 635 722 - -
Eupl12g01143 722 SUPERFAMILY CAD & PB1 domains 636 716 - -
Eupl12g01143 722 Gene3D - 144 248 IPR015300 -
Eupl12g01143 722 MobiDBLite consensus disorder prediction 607 629 - -
Eupl12g01143 722 SMART B3_2 146 248 IPR003340 GO:0003677
Eupl12g01143 722 MobiDBLite consensus disorder prediction 392 429 - -
Eupl12g01143 722 Pfam B3 DNA binding domain 146 247 IPR003340 GO:0003677
Eupl12g01143 722 FunFam Auxin response factor 144 248 - -
Eupl12g01143 722 Gene3D - 309 383 - -
Eupl12g01143 722 MobiDBLite consensus disorder prediction 607 627 - -
Eupl12g01143 722 ProSiteProfiles PB1 domain profile. 639 721 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl12g01143 Eupl-Chr12 27851478 27856497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl12g01143 553 722 B3 DNA Binding Superfamily AT5G62000 39.080 6.97e-26 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl12g01143 B3 4.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl12g01143 - - nnu:104585724 870.152